RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 CHORDC1Q9UHD1 332 aaPredicted RBP4.32□□□□□ -1.72
VPS29-202ENST00000447578 DHDHQ9UQ10 334 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 HS3ST3B1Q9Y662 390 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 KIF13AQ9H1H9 1805 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 C3P01024 1663 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 SSH2Q76I76 1423 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 ARHGEF10O15013 1369 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 PIK3R4Q99570 1358 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 TTC36A6NLP5 189 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 LRRC53A6NM62 1247 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 B4DGG1 531 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 CHL1O00533 1208 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 SH2B2O14492 632 aaPredicted RBP4.31□□□□□ -1.72
VPS29-202ENST00000447578 SMAD6O43541 496 aaKnown RBP4.31□□□□□ -1.72
VPS29-202ENST00000447578 FRAT2O75474 233 aaPredicted RBP4.31□□□□□ -1.72
VPS29-202ENST00000447578 CNTN5O94779 1100 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 CBX6O95503 412 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 ENO1P06733 434 aaKnown RBP4.31□□□□□ -1.72
VPS29-202ENST00000447578 ZNF8P17098 575 aaPredicted RBP4.31□□□□□ -1.72
VPS29-202ENST00000447578 CDH2P19022 906 aaPredicted RBP4.31□□□□□ -1.72
VPS29-202ENST00000447578 MCM3P25205 808 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 NDUFS1P28331 727 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 TTKP33981 857 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 GARSP41250 739 aaKnown RBP4.31□□□□□ -1.72
VPS29-202ENST00000447578 CYP4A11Q02928 519 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 AIMP2Q13155 320 aaKnown RBP4.31□□□□□ -1.72
VPS29-202ENST00000447578 SLC14A1Q13336 389 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 FRG1Q14331 258 aaKnown RBP4.31□□□□□ -1.72
VPS29-202ENST00000447578 KCNB1Q14721 858 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 MFSD13AQ14CX5 517 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 MTHFSDQ2M296 383 aaKnown RBP4.31□□□□□ -1.72
VPS29-202ENST00000447578 DPCR1Q3MIW9 517 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 GLE1Q53GS7 698 aaKnown RBP4.31□□□□□ -1.72
VPS29-202ENST00000447578 TMEM63BQ5T3F8 832 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 AADACL2Q6P093 401 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 ZNF549Q6P9A3 640 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 SLC30A9Q6PML9 568 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 SARM1Q6SZW1 724 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 DLK2Q6UY11 383 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 CHST9Q7L1S5 443 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 VSIG1Q86XK7 387 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 TEX11Q8IYF3 940 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 ARFGAP1Q8N6T3 406 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 RBMXL3Q8N7X1 1067 aaKnown RBP4.31□□□□□ -1.72
VPS29-202ENST00000447578 KCTD6Q8NC69 237 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 SETD9Q8NE22 299 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 CADM4Q8NFZ8 388 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 FAM110DQ8TAY7 271 aaPredicted RBP4.31□□□□□ -1.72
VPS29-202ENST00000447578 ATP6V1E2Q96A05 226 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 FAM149B1Q96BN6 582 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 ZNF845Q96IR2 970 aaPredicted RBP4.31□□□□□ -1.72
VPS29-202ENST00000447578 WDFY2Q96P53 400 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 FAM234AQ9H0X4 552 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 PDE7BQ9NP56 450 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 ARL15Q9NXU5 204 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 MORF4L1Q9UBU8 362 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 HSPB7Q9UBY9 170 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 TSPYL4Q9UJ04 414 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 PKP3Q9Y446 797 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 ZNF711Q9Y462 761 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.31□□□□□ -1.72
VPS29-202ENST00000447578 SIPA1L2Q9P2F8 1722 aaPredicted RBP4.31□□□□□ -1.72
VPS29-202ENST00000447578 TTC3P53804 2025 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 NRKQ7Z2Y5 1582 aa4.31□□□□□ -1.72
VPS29-202ENST00000447578 ARHGAP23Q9P227 1491 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 AKAP12Q02952 1782 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 SBNO1A3KN83 1393 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 FLT4P35916 1363 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 KIF24Q5T7B8 1368 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 ITSN1Q15811 1721 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 SPATA31A1Q5TZJ5 1347 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 FAM90A8PA6NJQ4 464 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 A8MV72 311 aaPredicted RBP4.3□□□□□ -1.72
VPS29-202ENST00000447578 MCIDASD6RGH6 385 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 PRYO14603 147 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 LDLRAD4O15165 306 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 CNOT3O75175 753 aaKnown RBP4.3□□□□□ -1.72
VPS29-202ENST00000447578 SEC31AO94979 1220 aaKnown RBP4.3□□□□□ -1.72
VPS29-202ENST00000447578 HLA-DQA2P01906 255 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 RFPL3SP0C7P2 107 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 FAM90A13PP0C7W8 464 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 FAM90A24PP0C7X0 464 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 SAT1P21673 171 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 MCCP23508 829 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 SKIV2L2P42285 1042 aaKnown RBP4.3□□□□□ -1.72
VPS29-202ENST00000447578 PTPN9P43378 593 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 CDH8P55286 799 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 RPS13P62277 151 aaKnown RBP4.3□□□□□ -1.72
VPS29-202ENST00000447578 EDRF1Q3B7T1 1238 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 RAB41Q5JT25 222 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 ATG9BQ674R7 924 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 C17orf99Q6UX52 265 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 IL20RBQ6UXL0 311 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 GSTA5Q7RTV2 222 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 PRSS45Q7RTY3 260 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 HSCBQ8IWL3 235 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 PELI3Q8N2H9 469 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 KAZALD1Q96I82 304 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 ZFYVE19Q96K21 471 aa4.3□□□□□ -1.72
VPS29-202ENST00000447578 ADAD1Q96M93 576 aaKnown RBP4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms