RNA–Protein interactions for RNA: ENST00000428728.5

TRIM39-209, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 1,013 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-209ENST00000428728 LHCGRP22888 699 aa17.1■□□□□ 0.33
TRIM39-209ENST00000428728 UCNP55089 124 aa17.1■□□□□ 0.33
TRIM39-209ENST00000428728 CDH6P55285 790 aa17.1■□□□□ 0.33
TRIM39-209ENST00000428728 MMRN1Q13201 1228 aa17.1■□□□□ 0.33
TRIM39-209ENST00000428728 PTPRRQ15256 657 aa17.1■□□□□ 0.33
TRIM39-209ENST00000428728 NFKBIBQ15653 356 aa17.1■□□□□ 0.33
TRIM39-209ENST00000428728 HEATR4Q86WZ0 1026 aa17.1■□□□□ 0.33
TRIM39-209ENST00000428728 NIPA2Q8N8Q9 360 aa17.1■□□□□ 0.33
TRIM39-209ENST00000428728 GPR156Q8NFN8 814 aa17.1■□□□□ 0.33
TRIM39-209ENST00000428728 LIN37Q96GY3 246 aaPredicted RBP17.1■□□□□ 0.33
TRIM39-209ENST00000428728 LRRN3Q9H3W5 708 aa17.1■□□□□ 0.33
TRIM39-209ENST00000428728 DPEP2Q9H4A9 486 aa17.1■□□□□ 0.33
TRIM39-209ENST00000428728 NT5MQ9NPB1 228 aa17.1■□□□□ 0.33
TRIM39-209ENST00000428728 BZW2Q9Y6E2 419 aaKnown RBP17.1■□□□□ 0.33
TRIM39-209ENST00000428728 A0A087X0T9 212 aa17.09■□□□□ 0.33
TRIM39-209ENST00000428728 A0A1W2PQ67 120 aa17.09■□□□□ 0.33
TRIM39-209ENST00000428728 NPIPB15A6NHN6 443 aaPredicted RBP17.09■□□□□ 0.33
TRIM39-209ENST00000428728 TNFRSF10CO14798 259 aa17.09■□□□□ 0.33
TRIM39-209ENST00000428728 PLD2O14939 933 aa17.09■□□□□ 0.33
TRIM39-209ENST00000428728 MFSD11O43934 449 aa17.09■□□□□ 0.33
TRIM39-209ENST00000428728 NOBOXO60393 691 aa17.09■□□□□ 0.33
TRIM39-209ENST00000428728 FAM228BP0C875 321 aa17.09■□□□□ 0.33
TRIM39-209ENST00000428728 CYP2A6P11509 494 aaPredicted RBP17.09■□□□□ 0.33
TRIM39-209ENST00000428728 MYCLP1P12525 358 aaPredicted RBP17.09■□□□□ 0.33
TRIM39-209ENST00000428728 HGFP14210 728 aa17.09■□□□□ 0.33
TRIM39-209ENST00000428728 CTPS1P17812 591 aa17.09■□□□□ 0.33
TRIM39-209ENST00000428728 TRIM23P36406 574 aa17.09■□□□□ 0.33
TRIM39-209ENST00000428728 PBX1P40424 430 aa17.09■□□□□ 0.33
TRIM39-209ENST00000428728 ETV3P41162 512 aa17.09■□□□□ 0.33
TRIM39-209ENST00000428728 INHBCP55103 352 aa17.09■□□□□ 0.33
TRIM39-209ENST00000428728 UBASH3AP57075 661 aa17.09■□□□□ 0.33
TRIM39-209ENST00000428728 C14orf28Q4W4Y0 310 aa17.09■□□□□ 0.33
TRIM39-209ENST00000428728 MARC1Q5VT66 337 aa17.09■□□□□ 0.33
TRIM39-209ENST00000428728 SPECC1LQ69YQ0 1117 aa17.09■□□□□ 0.33
TRIM39-209ENST00000428728 HSD11B1LQ7Z5J1 315 aa17.09■□□□□ 0.33
TRIM39-209ENST00000428728 TSPAN33Q86UF1 283 aa17.09■□□□□ 0.33
TRIM39-209ENST00000428728 JAMLQ86YT9 394 aa17.09■□□□□ 0.33
TRIM39-209ENST00000428728 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP17.09■□□□□ 0.33
TRIM39-209ENST00000428728 OR6C4Q8NGE1 309 aa17.09■□□□□ 0.33
TRIM39-209ENST00000428728 DTD2Q96FN9 168 aa17.09■□□□□ 0.33
TRIM39-209ENST00000428728 DPH1Q9BZG8 443 aa17.09■□□□□ 0.33
TRIM39-209ENST00000428728 STRADBQ9C0K7 418 aa17.09■□□□□ 0.33
TRIM39-209ENST00000428728 CARS2Q9HA77 564 aaKnown RBP17.09■□□□□ 0.33
TRIM39-209ENST00000428728 PHPT1Q9NRX4 125 aaPredicted RBP17.09■□□□□ 0.33
TRIM39-209ENST00000428728 ATXN7L1Q9ULK2 861 aaPredicted RBP17.09■□□□□ 0.33
TRIM39-209ENST00000428728 PHTF1Q9UMS5 762 aa17.09■□□□□ 0.33
TRIM39-209ENST00000428728 A0A0U1RQS6 177 aa17.08■□□□□ 0.32
TRIM39-209ENST00000428728 PGLSO95336 258 aa17.08■□□□□ 0.32
TRIM39-209ENST00000428728 MAP3K6O95382 1288 aa17.08■□□□□ 0.32
TRIM39-209ENST00000428728 CYP1A2P05177 515 aa17.08■□□□□ 0.32
TRIM39-209ENST00000428728 ITGA2BP08514 1039 aa17.08■□□□□ 0.32
TRIM39-209ENST00000428728 HOXC4P09017 264 aaPredicted RBP17.08■□□□□ 0.32
TRIM39-209ENST00000428728 CD48P09326 243 aa17.08■□□□□ 0.32
TRIM39-209ENST00000428728 NFKBIAP25963 317 aa17.08■□□□□ 0.32
TRIM39-209ENST00000428728 SKOR1P84550 965 aa17.08■□□□□ 0.32
TRIM39-209ENST00000428728 ZBED6P86452 979 aa17.08■□□□□ 0.32
TRIM39-209ENST00000428728 ITKQ08881 620 aa17.08■□□□□ 0.32
TRIM39-209ENST00000428728 C19orf57Q0VDD7 668 aa17.08■□□□□ 0.32
TRIM39-209ENST00000428728 ARHGEF7Q14155 803 aa17.08■□□□□ 0.32
TRIM39-209ENST00000428728 TAF1BQ53T94 588 aaPredicted RBP17.08■□□□□ 0.32
TRIM39-209ENST00000428728 CERCAMQ5T4B2 595 aa17.08■□□□□ 0.32
TRIM39-209ENST00000428728 ARMC12Q5T9G4 340 aa17.08■□□□□ 0.32
TRIM39-209ENST00000428728 RAET1GQ6H3X3 334 aa17.08■□□□□ 0.32
TRIM39-209ENST00000428728 USP45Q70EL2 814 aa17.08■□□□□ 0.32
TRIM39-209ENST00000428728 RAB11FIP2Q7L804 512 aa17.08■□□□□ 0.32
TRIM39-209ENST00000428728 CLEC14AQ86T13 490 aa17.08■□□□□ 0.32
TRIM39-209ENST00000428728 CPNE8Q86YQ8 564 aa17.08■□□□□ 0.32
TRIM39-209ENST00000428728 FBXO39Q8N4B4 442 aa17.08■□□□□ 0.32
TRIM39-209ENST00000428728 SPOCK2Q92563 424 aa17.08■□□□□ 0.32
TRIM39-209ENST00000428728 SYN2Q92777 582 aaPredicted RBP17.08■□□□□ 0.32
TRIM39-209ENST00000428728 CCDC97Q96F63 343 aaPredicted RBP17.08■□□□□ 0.32
TRIM39-209ENST00000428728 RNF215Q9Y6U7 377 aa17.08■□□□□ 0.32
TRIM39-209ENST00000428728 TK2O00142 265 aa17.07■□□□□ 0.32
TRIM39-209ENST00000428728 PDE2AO00408 941 aaPredicted RBP17.07■□□□□ 0.32
TRIM39-209ENST00000428728 GLB1P16278 677 aa17.07■□□□□ 0.32
TRIM39-209ENST00000428728 UGT1A5P35504 534 aa17.07■□□□□ 0.32
TRIM39-209ENST00000428728 MLLT3P42568 568 aaPredicted RBP17.07■□□□□ 0.32
TRIM39-209ENST00000428728 GNPDA1P46926 289 aa17.07■□□□□ 0.32
TRIM39-209ENST00000428728 MAZP56270 477 aaKnown RBP17.07■□□□□ 0.32
TRIM39-209ENST00000428728 CDK3Q00526 305 aa17.07■□□□□ 0.32
TRIM39-209ENST00000428728 TSR1Q2NL82 804 aaKnown RBP17.07■□□□□ 0.32
TRIM39-209ENST00000428728 ZSCAN23Q3MJ62 389 aa17.07■□□□□ 0.32
TRIM39-209ENST00000428728 CCDC122Q5T0U0 273 aa17.07■□□□□ 0.32
TRIM39-209ENST00000428728 ALKBH5Q6P6C2 394 aaKnown RBP17.07■□□□□ 0.32
TRIM39-209ENST00000428728 DOK6Q6PKX4 331 aa17.07■□□□□ 0.32
TRIM39-209ENST00000428728 PCSK4Q6UW60 755 aa17.07■□□□□ 0.32
TRIM39-209ENST00000428728 Q6ZVL8 140 aa17.07■□□□□ 0.32
TRIM39-209ENST00000428728 SPRED1Q7Z699 444 aa17.07■□□□□ 0.32
TRIM39-209ENST00000428728 ZNF564Q8TBZ8 553 aaPredicted RBP17.07■□□□□ 0.32
TRIM39-209ENST00000428728 KIAA1524Q8TCG1 905 aa17.07■□□□□ 0.32
TRIM39-209ENST00000428728 TMEM74Q96NL1 305 aa17.07■□□□□ 0.32
TRIM39-209ENST00000428728 SEMA3CQ99985 751 aa17.07■□□□□ 0.32
TRIM39-209ENST00000428728 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.07■□□□□ 0.32
TRIM39-209ENST00000428728 RCOR3Q9P2K3 495 aaPredicted RBP17.07■□□□□ 0.32
TRIM39-209ENST00000428728 LRIT1Q9P2V4 623 aa17.07■□□□□ 0.32
TRIM39-209ENST00000428728 PISDQ9UG56 409 aa17.07■□□□□ 0.32
TRIM39-209ENST00000428728 CAPN11Q9UMQ6 739 aa17.07■□□□□ 0.32
TRIM39-209ENST00000428728 TTLL3Q9Y4R7 772 aa17.07■□□□□ 0.32
TRIM39-209ENST00000428728 GOLGA6L19H0YKK7 550 aa17.06■□□□□ 0.32
TRIM39-209ENST00000428728 ERVH48-1M5A8F1 160 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms