RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 CCNG1P51959 295 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 INHBEP58166 350 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 COG7P83436 770 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 SMAD3P84022 425 aaKnown RBP8.38□□□□□ -1.07
CD44-208ENST00000428726 ZNF33AQ06730 810 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 TRIP10Q15642 601 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 TBCCQ15814 346 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 NRF1Q16656 503 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 KIF19Q2TAC6 998 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 AGKQ53H12 422 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 PSAPL1Q6NUJ1 521 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 FAM151BQ6UXP7 276 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 BEND5Q7L4P6 421 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 RBM23Q86U06 439 aaKnown RBP8.38□□□□□ -1.07
CD44-208ENST00000428726 ARHGAP24Q8N264 748 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 SLC22A17Q8WUG5 538 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 TTPALQ9BTX7 342 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 TRIM4Q9C037 500 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 MMADHCQ9H3L0 296 aaPredicted RBP8.38□□□□□ -1.07
CD44-208ENST00000428726 STN1Q9H668 368 aaKnown RBP8.38□□□□□ -1.07
CD44-208ENST00000428726 COPS7BQ9H9Q2 264 aaPredicted RBP8.38□□□□□ -1.07
CD44-208ENST00000428726 TLR8Q9NR97 1041 aaKnown RBP8.38□□□□□ -1.07
CD44-208ENST00000428726 OXSMQ9NWU1 459 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 ZMYM5Q9UJ78 669 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 VPS28Q9UK41 221 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 USP22Q9UPT9 525 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 FAM149AA5PLN7 773 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 SUPT3HB4E1H0 165 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 GRID2O43424 1007 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 TBL1XO60907 577 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 SUPT3HO75486 399 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 GPC4O75487 556 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 C1RP00736 705 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 ANPEPP15144 967 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 RAG1P15918 1043 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 SELPP16109 830 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 GRK2P25098 689 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 PIK3R1P27986 724 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 RENBPP51606 427 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 THOP1P52888 689 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 GEMP55040 296 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 MS4A2Q01362 244 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 PPP1R8Q12972 351 aaKnown RBP8.38□□□□□ -1.07
CD44-208ENST00000428726 TSTA3Q13630 321 aaPredicted RBP8.38□□□□□ -1.07
CD44-208ENST00000428726 TSNQ15631 228 aaKnown RBP8.38□□□□□ -1.07
CD44-208ENST00000428726 MAPRE1Q15691 268 aaKnown RBP8.38□□□□□ -1.07
CD44-208ENST00000428726 CCDC153Q494R4 210 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 MAP3K21Q5TCX8 1036 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 AP1ARQ63HQ0 302 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 UGT3A1Q6NUS8 523 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 ZNF549Q6P9A3 640 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 MBOAT1Q6ZNC8 495 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 MILR1Q7Z6M3 343 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 SPATA24Q86W54 205 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 SLC22A15Q8IZD6 547 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 PTGR2Q8N8N7 351 aaPredicted RBP8.38□□□□□ -1.07
CD44-208ENST00000428726 ENDOVQ8N8Q3 282 aaKnown RBP8.38□□□□□ -1.07
CD44-208ENST00000428726 PIP4K2CQ8TBX8 421 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 ISL2Q96A47 359 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 ANKRD27Q96NW4 1050 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 IL12RB2Q99665 862 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 BOCQ9BWV1 1114 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 TDRD1Q9BXT4 1180 aaKnown RBP8.38□□□□□ -1.07
CD44-208ENST00000428726 UPF3AQ9H1J1 476 aaKnown RBP8.38□□□□□ -1.07
CD44-208ENST00000428726 CLIC5Q9NZA1 410 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 ADAMTS6Q9UKP5 1117 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 SORCS3Q9UPU3 1222 aa8.38□□□□□ -1.07
CD44-208ENST00000428726 ARHGEF37A1IGU5 675 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 CAPN8A6NHC0 703 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 A8MT66 165 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 ARVCFO00192 962 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 FFAR3O14843 346 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 GPR42O15529 346 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 TIMM44O43615 452 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 RNASEH1O60930 286 aaKnown RBP8.37□□□□□ -1.07
CD44-208ENST00000428726 RHOBTB1O94844 696 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 TRIM16O95361 564 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 SERPINA6P08185 405 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 CSF2RAP15509 400 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 ATP5C1P36542 298 aaKnown RBP8.37□□□□□ -1.07
CD44-208ENST00000428726 TM4SF4P48230 202 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 CDK7P50613 346 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 RPL14P50914 215 aaKnown RBP8.37□□□□□ -1.07
CD44-208ENST00000428726 DSC1Q08554 894 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 PTPRNQ16849 979 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 TMPRSS6Q8IU80 811 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 APCDD1Q8J025 514 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 MDGA1Q8NFP4 955 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 ARRDC2Q8TBH0 407 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 DDI1Q8WTU0 396 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 VPS33AQ96AX1 596 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 PRICKLE1Q96MT3 831 aaPredicted RBP8.37□□□□□ -1.07
CD44-208ENST00000428726 FCRL5Q96RD9 977 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 C1QTNF1Q9BXJ1 281 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 MID1IP1Q9NPA3 183 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 TLR6Q9Y2C9 796 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 VWA7Q9Y334 891 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 SCN5AQ14524 2016 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 A0A1B0GTW7 788 aa8.37□□□□□ -1.07
CD44-208ENST00000428726 NPEPPSL1A6NEC2 478 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms