RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 FMR1Q06787 632 aaKnown RBP eCLIP13.34□□□□□ -0.272e-8■□□□□ 10.2
CCDC88A-204ENST00000413716 CDK10Q15131 360 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 TMEM110Q86TL2 294 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 TC2NQ8N9U0 490 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 ETNPPLQ8TBG4 499 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 B3GNT4Q9C0J1 378 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 RPTORQ8N122 1335 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 HACD1B0YJ81 288 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 AMD1P17707 334 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 ELK3P41970 407 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 PTPN9P43378 593 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 DCDC1P59894 354 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 CBLBQ13191 982 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 SMARCD1Q96GM5 515 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 STARD7Q9NQZ5 370 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 CFAP97Q9P2B7 532 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 LOC100509620A0A075B734 347 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 A0A0G2JMP0 313 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 ERVV-1B6SEH8 477 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 VAPBO95292 243 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 ITGA7Q13683 1181 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 XKR6Q5GH73 641 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 OR4M2Q8NGB6 313 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 COQ8BQ96D53 544 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 ALG9Q9H6U8 611 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 B3GAT3O94766 335 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 PON1P27169 355 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 VLDLRP98155 873 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 TMC3Q7Z5M5 1100 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 LDHDQ86WU2 507 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 MRPL57Q9BQC6 102 aaKnown RBP13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 ZYG11BQ9C0D3 744 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 C17orf102A2RUQ5 167 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 MGAT1P26572 445 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 ERP29P30040 261 aaKnown RBP13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 SLC16A9Q7RTY1 509 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 CFAP206Q8IYR0 622 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 C15orf40Q8WUR7 153 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 LPAR1Q92633 364 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 MAGEL2Q9UJ55 1249 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 ASTN2O75129 1339 aaPredicted RBP13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 ATP10AO60312 1499 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 PRMT5O14744 637 aaPredicted RBP13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 ZNF792Q3KQV3 632 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 SPOCD1Q6ZMY3 1216 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 ZNF627Q7L945 461 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 ACOT1Q86TX2 421 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 PCDH20Q8N6Y1 951 aaKnown RBP13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 KXD1Q9BQD3 176 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 ZNF225Q9UK10 706 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 HCN1O60741 890 aa13.33□□□□□ -0.27
CCDC88A-204ENST00000413716 CEP295NLQ96MC4 621 aa13.33□□□□□ -0.27
CCDC88A-204ENST00000413716 SLC39A1Q9NY26 324 aa13.33□□□□□ -0.27
CCDC88A-204ENST00000413716 TRPS1Q9UHF7 1281 aa13.33□□□□□ -0.27
CCDC88A-204ENST00000413716 CYTH4Q9UIA0 394 aa13.33□□□□□ -0.27
CCDC88A-204ENST00000413716 SERPINA6P08185 405 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 IGFBP5P24593 272 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 ST3GAL1Q11201 340 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 ZNF720Q7Z2F6 126 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 TRIM74Q86UV6 250 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 TRIM73Q86UV7 250 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 BBS1Q8NFJ9 593 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 UFD1Q92890 307 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 SEC14L3Q9UDX4 400 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 ARAP3Q8WWN8 1544 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 ZC3H11AO75152 810 aaKnown RBP eCLIP13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 ZNF3P17036 446 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 GRK1Q15835 563 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 ARSKQ6UWY0 536 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 GALNT5Q7Z7M9 940 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 HTR3CQ8WXA8 447 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 TXN2Q99757 166 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 QRICH2Q9H0J4 1663 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 CCRL2O00421 344 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 NDUFS2O75306 463 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 MANFP55145 182 aaKnown RBP13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 TKFCQ3LXA3 575 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 ATXN7L2Q5T6C5 722 aaPredicted RBP13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 PARK7Q99497 189 aaKnown RBP13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 GULP1Q9UBP9 304 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 IFT52Q9Y366 437 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 MED31Q9Y3C7 131 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 CCDC163A0A0D9SF12 145 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 F5H6K3 240 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 F8A1P23610 371 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 TTPAP49638 278 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 OR2B6P58173 313 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 KLRC3Q07444 240 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 SLC30A6Q6NXT4 461 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 GPR156Q8NFN8 814 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 PIWIL2Q8TC59 973 aaKnown RBP13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 PDLIM2Q96JY6 352 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 ZNF717Q9BY31 904 aaPredicted RBP13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 CPVLQ9H3G5 476 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 PCDHA11Q9Y5I1 949 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 CIB4A0PJX0 185 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 RFXANKO14593 260 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 GPR182O15218 404 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 PRKD3O94806 890 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 SLC12A3P55017 1021 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms