RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 DDIT4Q9NX09 232 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 FAM237AA0A1B0GTK4 181 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 ITGA4P13612 1032 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 SSTR1P30872 391 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 TAF6P49848 677 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 TRNT1Q96Q11 434 aaKnown RBP12.91□□□□□ -0.34
COL6A3-206ENST00000409809 DOLKQ9UPQ8 538 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 PDE4DIPQ5VU43 2346 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 OR56A5P0C7T3 313 aa12.9□□□□□ -0.34
COL6A3-206ENST00000409809 AGTR1P30556 359 aa12.9□□□□□ -0.34
COL6A3-206ENST00000409809 RPL9P32969 192 aaKnown RBP12.9□□□□□ -0.34
COL6A3-206ENST00000409809 ARCN1P48444 511 aaKnown RBP12.9□□□□□ -0.34
COL6A3-206ENST00000409809 FAM43BQ6ZT52 329 aaPredicted RBP12.9□□□□□ -0.34
COL6A3-206ENST00000409809 GPRIN3Q6ZVF9 776 aa12.9□□□□□ -0.34
COL6A3-206ENST00000409809 KDELC2Q7Z4H8 507 aa12.9□□□□□ -0.34
COL6A3-206ENST00000409809 THAP6Q8TBB0 222 aa12.9□□□□□ -0.34
COL6A3-206ENST00000409809 SUCOQ9UBS9 1254 aaKnown RBP12.9□□□□□ -0.34
COL6A3-206ENST00000409809 DGKBQ9Y6T7 804 aa12.9□□□□□ -0.34
COL6A3-206ENST00000409809 ZIK1Q3SY52 487 aaPredicted RBP12.9□□□□□ -0.34
COL6A3-206ENST00000409809 ZNF572Q7Z3I7 529 aaPredicted RBP12.9□□□□□ -0.34
COL6A3-206ENST00000409809 OR14K1Q8NGZ2 314 aa12.9□□□□□ -0.34
COL6A3-206ENST00000409809 KCTD7Q96MP8 289 aa12.9□□□□□ -0.34
COL6A3-206ENST00000409809 FAM49AQ9H0Q0 323 aaPredicted RBP12.9□□□□□ -0.34
COL6A3-206ENST00000409809 ZNF70Q9UC06 446 aaPredicted RBP12.9□□□□□ -0.34
COL6A3-206ENST00000409809 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.9□□□□□ -0.34
COL6A3-206ENST00000409809 OR10H3O60404 316 aa12.9□□□□□ -0.34
COL6A3-206ENST00000409809 MAPK10P53779 464 aa12.9□□□□□ -0.34
COL6A3-206ENST00000409809 ZNF177Q13360 481 aaPredicted RBP12.9□□□□□ -0.34
COL6A3-206ENST00000409809 WSCD2Q2TBF2 565 aa12.9□□□□□ -0.34
COL6A3-206ENST00000409809 PHF21BQ96EK2 531 aa12.9□□□□□ -0.34
COL6A3-206ENST00000409809 OSGEPQ9NPF4 335 aa12.9□□□□□ -0.34
COL6A3-206ENST00000409809 TMEM94Q12767 1356 aa12.9□□□□□ -0.34
COL6A3-206ENST00000409809 CARNS1A5YM72 827 aa12.9□□□□□ -0.34
COL6A3-206ENST00000409809 NCF1BA6NI72 391 aaPredicted RBP12.9□□□□□ -0.34
COL6A3-206ENST00000409809 AQP12BA6NM10 295 aa12.9□□□□□ -0.34
COL6A3-206ENST00000409809 NCF1CA8MVU1 366 aaPredicted RBP12.9□□□□□ -0.34
COL6A3-206ENST00000409809 NCF1P14598 390 aaPredicted RBP12.9□□□□□ -0.34
COL6A3-206ENST00000409809 EPB42P16452 691 aa12.9□□□□□ -0.34
COL6A3-206ENST00000409809 CTBP2P56545 445 aa12.9□□□□□ -0.34
COL6A3-206ENST00000409809 CYP2A13Q16696 494 aa12.9□□□□□ -0.34
COL6A3-206ENST00000409809 AQP12AQ8IXF9 295 aa12.9□□□□□ -0.34
COL6A3-206ENST00000409809 LINC00471Q8N535 108 aa12.9□□□□□ -0.34
COL6A3-206ENST00000409809 CCDC86Q9H6F5 360 aaKnown RBP12.9□□□□□ -0.34
COL6A3-206ENST00000409809 M0R036 132 aa12.9□□□□□ -0.34
COL6A3-206ENST00000409809 AFF1P51825 1210 aaKnown RBP12.9□□□□□ -0.34
COL6A3-206ENST00000409809 GNA12Q03113 381 aa12.9□□□□□ -0.34
COL6A3-206ENST00000409809 GRAPQ13588 217 aa12.9□□□□□ -0.34
COL6A3-206ENST00000409809 DDX39BQ13838 428 aaKnown RBP12.9□□□□□ -0.34
COL6A3-206ENST00000409809 ZNHIT3Q15649 155 aaPredicted RBP12.9□□□□□ -0.34
COL6A3-206ENST00000409809 HPS6Q86YV9 775 aa12.9□□□□□ -0.34
COL6A3-206ENST00000409809 GRAPLQ8TC17 118 aaPredicted RBP12.9□□□□□ -0.34
COL6A3-206ENST00000409809 TRPM4Q8TD43 1214 aa12.9□□□□□ -0.34
COL6A3-206ENST00000409809 MTRRQ9UBK8 725 aa12.9□□□□□ -0.34
COL6A3-206ENST00000409809 TSR3Q9UJK0 312 aaKnown RBP12.9□□□□□ -0.34
COL6A3-206ENST00000409809 PCDHGA11Q9Y5H2 935 aa12.9□□□□□ -0.34
COL6A3-206ENST00000409809 PTTG1O95997 202 aa12.9□□□□□ -0.34
COL6A3-206ENST00000409809 GCNT7Q6ZNI0 430 aa12.9□□□□□ -0.34
COL6A3-206ENST00000409809 RNF148Q8N7C7 305 aa12.9□□□□□ -0.34
COL6A3-206ENST00000409809 RCN3Q96D15 328 aa12.9□□□□□ -0.34
COL6A3-206ENST00000409809 ASB9Q96DX5 294 aa12.9□□□□□ -0.34
COL6A3-206ENST00000409809 UQCC2Q9BRT2 126 aa12.9□□□□□ -0.34
COL6A3-206ENST00000409809 ALG2Q9H553 416 aa12.9□□□□□ -0.34
COL6A3-206ENST00000409809 SETD4Q9NVD3 440 aa12.9□□□□□ -0.34
COL6A3-206ENST00000409809 OR6A2O95222 327 aa12.9□□□□□ -0.35
COL6A3-206ENST00000409809 HMGCRP04035 888 aa12.9□□□□□ -0.35
COL6A3-206ENST00000409809 AQP4P55087 323 aa12.9□□□□□ -0.35
COL6A3-206ENST00000409809 FAM98CQ17RN3 349 aaKnown RBP12.9□□□□□ -0.35
COL6A3-206ENST00000409809 CPSF7Q8N684 471 aaKnown RBP12.9□□□□□ -0.35
COL6A3-206ENST00000409809 SERPINB11Q96P15 392 aa12.9□□□□□ -0.35
COL6A3-206ENST00000409809 CDHR5Q9HBB8 845 aa12.9□□□□□ -0.35
COL6A3-206ENST00000409809 OGDHLQ9ULD0 1010 aa12.9□□□□□ -0.35
COL6A3-206ENST00000409809 USP20Q9Y2K6 914 aa12.9□□□□□ -0.35
COL6A3-206ENST00000409809 AP2A2O94973 939 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 HNRNPFP52597 415 aaKnown RBP12.89□□□□□ -0.35
COL6A3-206ENST00000409809 BMPR2Q13873 1038 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 RAB11FIP2Q7L804 512 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 CPNE9Q8IYJ1 553 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 PHACTR4Q8IZ21 702 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 MFSD2AQ8NA29 543 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 SH3RF3Q8TEJ3 882 aaPredicted RBP12.89□□□□□ -0.35
COL6A3-206ENST00000409809 GAL3ST3Q96A11 431 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 ZNF350Q9GZX5 532 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 CPNE5Q9HCH3 593 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 PREBQ9HCU5 417 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 MYO3AQ8NEV4 1616 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 B8ZZF3 427 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 NUAK1O60285 661 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 TADA2AO75478 443 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 GLRA2P23416 452 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 DCDC1P59894 354 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 PLEKHN1Q494U1 663 aaPredicted RBP12.89□□□□□ -0.35
COL6A3-206ENST00000409809 CSGALNACT1Q8TDX6 532 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 AURKBQ96GD4 344 aaPredicted RBP12.89□□□□□ -0.35
COL6A3-206ENST00000409809 GFM1Q96RP9 751 aaKnown RBP12.89□□□□□ -0.35
COL6A3-206ENST00000409809 DPAGT1Q9H3H5 408 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 PIF1Q9H611 641 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 PVALBP20472 110 aaPredicted RBP12.89□□□□□ -0.35
COL6A3-206ENST00000409809 ECHS1P30084 290 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 NRG3P56975 720 aa12.89□□□□□ -0.35
COL6A3-206ENST00000409809 GET4Q7L5D6 327 aaPredicted RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms