RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 TEKT1Q969V4 418 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 ALG14Q96F25 216 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 ELMOD3Q96FG2 381 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 GAL3ST4Q96RP7 486 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 UTP14AQ9BVJ6 771 aaKnown RBP4.18□□□□□ -1.74
HMGB1-204ENST00000399489 R3HDMLQ9H3Y0 253 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 GALNT9Q9HCQ5 603 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 TM9SF3Q9HD45 589 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 DDX18Q9NVP1 670 aaKnown RBP4.18□□□□□ -1.74
HMGB1-204ENST00000399489 THAP1Q9NVV9 213 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 NCKIPSDQ9NZQ3 722 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 HDAC6Q9UBN7 1215 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 FAM153AQ9UHL3 310 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 CFAP45Q9UL16 551 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 CAB39Q9Y376 341 aaPredicted RBP4.18□□□□□ -1.74
HMGB1-204ENST00000399489 TMED5Q9Y3A6 229 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 TEX264Q9Y6I9 313 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 THOC2Q8NI27 1593 aaKnown RBP4.18□□□□□ -1.74
HMGB1-204ENST00000399489 MAST3O60307 1309 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 LOC100509620A0A075B734 347 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 CDHR4A6H8M9 788 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 ANXA2P2A6NMY6 339 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 MARCH11A6NNE9 402 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 FAM86B1E9PN63 330 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 H0YCG3 227 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 M0QZQ0 153 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 SNAP23O00161 211 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 VPS4BO75351 444 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 AVILO75366 819 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 TACC1O75410 805 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 AGFG2O95081 481 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 MMP2P08253 660 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 ATXN1LP0C7T5 689 aaKnown RBP4.18□□□□□ -1.74
HMGB1-204ENST00000399489 HSPA5P11021 654 aaKnown RBP4.18□□□□□ -1.74
HMGB1-204ENST00000399489 PRG2P13727 222 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 HNF1BP35680 557 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 SKIV2L2P42285 1042 aaKnown RBP4.18□□□□□ -1.74
HMGB1-204ENST00000399489 PCP4P48539 62 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 RAB28P51157 221 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 ZNF134P52741 427 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 NME5P56597 212 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 LILRA4P59901 499 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 PRKCEQ02156 737 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 CETN1Q12798 172 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 IKQ13123 557 aaPredicted RBP4.18□□□□□ -1.74
HMGB1-204ENST00000399489 ACOX1Q15067 660 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 TWISTNBQ3B726 338 aaPredicted RBP4.18□□□□□ -1.74
HMGB1-204ENST00000399489 ARHGAP40Q5TG30 622 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 GLDNQ6ZMI3 551 aaPredicted RBP4.18□□□□□ -1.74
HMGB1-204ENST00000399489 CACNA2D4Q7Z3S7 1137 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 KRT27Q7Z3Y8 459 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 TLK2Q86UE8 772 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 IQCHQ86VS3 1027 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 SPARTQ8N0X7 666 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP4.18□□□□□ -1.74
HMGB1-204ENST00000399489 NHLRC2Q8NBF2 726 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 SLC17A8Q8NDX2 589 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 NEK11Q8NG66 645 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 OR7G3Q8NG95 312 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 RASSF8Q8NHQ8 419 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 PSMA8Q8TAA3 256 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 ST7LQ8TDW4 575 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 BCL2L2Q92843 193 aaPredicted RBP4.18□□□□□ -1.74
HMGB1-204ENST00000399489 ZKSCAN4Q969J2 545 aaPredicted RBP4.18□□□□□ -1.74
HMGB1-204ENST00000399489 PPP2R3CQ969Q6 453 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 PTERQ96BW5 349 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 DTNBP1Q96EV8 351 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 MMABQ96EY8 250 aaPredicted RBP4.18□□□□□ -1.74
HMGB1-204ENST00000399489 BOD1Q96IK1 185 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 COG3Q96JB2 828 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 Q96MF0 132 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 PIMREGQ9BSJ6 248 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 CCDC94Q9BW85 323 aaPredicted RBP4.18□□□□□ -1.74
HMGB1-204ENST00000399489 TLR10Q9BXR5 811 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 GLIS2Q9BZE0 524 aaPredicted RBP4.18□□□□□ -1.74
HMGB1-204ENST00000399489 HRH4Q9H3N8 390 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 DENND2DQ9H6A0 471 aaPredicted RBP4.18□□□□□ -1.74
HMGB1-204ENST00000399489 CXorf36Q9H7Y0 433 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 TMEM206Q9H813 350 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 GBA2Q9HCG7 927 aaPredicted RBP4.18□□□□□ -1.74
HMGB1-204ENST00000399489 DDX4Q9NQI0 724 aaKnown RBP4.18□□□□□ -1.74
HMGB1-204ENST00000399489 PRMT8Q9NR22 394 aaPredicted RBP4.18□□□□□ -1.74
HMGB1-204ENST00000399489 C20orf141Q9NUB4 165 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 SETD4Q9NVD3 440 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 ATAD3AQ9NVI7 634 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 ARHGEF38Q9NXL2 777 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 C6orf203Q9P0P8 240 aaPredicted RBP4.18□□□□□ -1.74
HMGB1-204ENST00000399489 COX16Q9P0S2 106 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 HMG20BQ9P0W2 317 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 STK26Q9P289 416 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 CRNNQ9UBG3 495 aaPredicted RBP4.18□□□□□ -1.74
HMGB1-204ENST00000399489 PEMTQ9UBM1 199 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 GABRQQ9UN88 632 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 POLR2AP24928 1970 aaKnown RBP4.18□□□□□ -1.74
HMGB1-204ENST00000399489 A0A1B0GTW7 788 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 A0A1W2PRG0 241 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 OOEPA6NGQ2 149 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 LACTBL1A8MY62 500 aa4.17□□□□□ -1.74
HMGB1-204ENST00000399489 EIF3CLB5ME19 914 aaKnown RBP4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms