RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 ATPAF2Q8N5M1 289 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 OR52K2Q8NGK3 314 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 GMCL1Q96IK5 515 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 GFM1Q96RP9 751 aaKnown RBP9.33□□□□□ -0.92
COL28A1-201ENST00000399429 DHRS4Q9BTZ2 278 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 YTHDF1Q9BYJ9 559 aaKnown RBP9.33□□□□□ -0.92
COL28A1-201ENST00000399429 OR2B2Q9GZK3 357 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 CCDC59Q9P031 241 aaKnown RBP9.33□□□□□ -0.92
COL28A1-201ENST00000399429 ZNHIT2Q9UHR6 403 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 DUOX1Q9NRD9 1551 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 TSPAN3O60637 253 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 YES1P07947 543 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 MSH3P20585 1137 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 HSD17B4P51659 736 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 PLA2G16P53816 162 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 RBP5P82980 135 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 NRG1Q02297 640 aaPredicted RBP9.32□□□□□ -0.92
COL28A1-201ENST00000399429 PWP1Q13610 501 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 TSTA3Q13630 321 aaPredicted RBP9.32□□□□□ -0.92
COL28A1-201ENST00000399429 LRP8Q14114 963 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 PON2Q15165 354 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 ZNF284Q2VY69 593 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 FAM214AQ32MH5 1076 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 TBRG1Q3YBR2 411 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 FBXO48Q5FWF7 155 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 NAPRTQ6XQN6 538 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 GCNT7Q6ZNI0 430 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 PLEKHM3Q6ZWE6 761 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 ITIH5Q86UX2 942 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 GOLM1Q8NBJ4 401 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 PCDH19Q8TAB3 1148 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 BSNDQ8WZ55 320 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 PIK3R3Q92569 461 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 C19orf60Q96EN9 201 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 FBRSL1Q9HCM7 1045 aaKnown RBP9.32□□□□□ -0.92
COL28A1-201ENST00000399429 INVSQ9Y283 1065 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 BOLA1Q9Y3E2 137 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 SESN1Q9Y6P5 492 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 N4BP2Q86UW6 1770 aaPredicted RBP9.32□□□□□ -0.92
COL28A1-201ENST00000399429 SLIT3O75094 1523 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 BCLAF3A2AJT9 711 aaKnown RBP9.32□□□□□ -0.92
COL28A1-201ENST00000399429 NUAK1O60285 661 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 KATNA1O75449 491 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 ASS1P00966 412 aaKnown RBP9.32□□□□□ -0.92
COL28A1-201ENST00000399429 ANXA6P08133 673 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 MYF6P23409 242 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 HTR2BP41595 481 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 STAT5BP51692 787 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 DAG1Q14118 895 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 TMEM132DQ14C87 1099 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 MED22Q15528 200 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 NPTX1Q15818 432 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 TPRG1LQ5T0D9 272 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 C1orf220Q5T0J3 134 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 ERAP2Q6P179 960 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 UBE2Q1Q7Z7E8 422 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 CARM1Q86X55 608 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 XYLT1Q86Y38 959 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 PTGR2Q8N8N7 351 aaPredicted RBP9.32□□□□□ -0.92
COL28A1-201ENST00000399429 TOP1MTQ969P6 601 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 SLC35B4Q969S0 331 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 PABPC5Q96DU9 382 aaKnown RBP9.32□□□□□ -0.92
COL28A1-201ENST00000399429 CDCA7Q9BWT1 371 aaPredicted RBP9.32□□□□□ -0.92
COL28A1-201ENST00000399429 RHOBTB2Q9BYZ6 727 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 TMLHEQ9NVH6 421 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 ATP6V1HQ9UI12 483 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 LEF1Q9UJU2 399 aaPredicted RBP9.32□□□□□ -0.92
COL28A1-201ENST00000399429 IGLV3-22A0A075B6J6 115 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 PIPSLA2A3N6 862 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 H0YJX3 145 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 SLC22A2O15244 555 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 RHOBTB1O94844 696 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 OLIG2Q13516 323 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 ZNF267Q14586 743 aaPredicted RBP9.32□□□□□ -0.92
COL28A1-201ENST00000399429 TAF12Q16514 161 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 PPP1R3AQ16821 1122 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 NT5DC4Q86YG4 428 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 PHC2Q8IXK0 858 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 OR8H3Q8N146 312 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 CADM2Q8N3J6 435 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 IL31RAQ8NI17 732 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 TMBIM1Q969X1 311 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 PHOX2BQ99453 314 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 SORT1Q99523 831 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 ELOVL6Q9H5J4 265 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 CASS4Q9NQ75 786 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 ING3Q9NXR8 418 aa9.32□□□□□ -0.92
COL28A1-201ENST00000399429 PRR23D1E9PI22 279 aaPredicted RBP9.31□□□□□ -0.92
COL28A1-201ENST00000399429 TNFRSF10AO00220 468 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 GRIN3BO60391 1043 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 PRR23D2P0DMB1 279 aaPredicted RBP9.31□□□□□ -0.92
COL28A1-201ENST00000399429 MAPK12P53778 367 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 CCNA1P78396 465 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 BNC1Q01954 994 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 RABL3Q5HYI8 236 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 DGKKQ5KSL6 1271 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 CACHD1Q5VU97 1274 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 ZNF517Q6ZMY9 492 aaPredicted RBP9.31□□□□□ -0.92
COL28A1-201ENST00000399429 TRIM69Q86WT6 500 aa9.31□□□□□ -0.92
COL28A1-201ENST00000399429 CLYBLQ8N0X4 340 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms