RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 C1GALT1C1Q96EU7 318 aa3.64□□□□□ -1.83
MCF2-202ENST00000370573 CYP2S1Q96SQ9 504 aa3.64□□□□□ -1.83
MCF2-202ENST00000370573 NCAPGQ9BPX3 1015 aa3.64□□□□□ -1.83
MCF2-202ENST00000370573 TRIM62Q9BVG3 475 aa3.64□□□□□ -1.83
MCF2-202ENST00000370573 TKTL2Q9H0I9 626 aa3.64□□□□□ -1.83
MCF2-202ENST00000370573 TTYH1Q9H313 450 aaPredicted RBP3.64□□□□□ -1.83
MCF2-202ENST00000370573 PLEKHA4Q9H4M7 779 aa3.64□□□□□ -1.83
MCF2-202ENST00000370573 WDCPQ9H6R7 721 aa3.64□□□□□ -1.83
MCF2-202ENST00000370573 CNTD2Q9H8S5 307 aa3.64□□□□□ -1.83
MCF2-202ENST00000370573 GKN1Q9NS71 199 aa3.64□□□□□ -1.83
MCF2-202ENST00000370573 RBM12Q9NTZ6 932 aaKnown RBP3.64□□□□□ -1.83
MCF2-202ENST00000370573 STAU2Q9NUL3 570 aaKnown RBP eCLIP3.64□□□□□ -1.83
MCF2-202ENST00000370573 ARHGEF38Q9NXL2 777 aa3.64□□□□□ -1.83
MCF2-202ENST00000370573 CWC15Q9P013 229 aaKnown RBP3.64□□□□□ -1.83
MCF2-202ENST00000370573 MARCH2Q9P0N8 246 aa3.64□□□□□ -1.83
MCF2-202ENST00000370573 DNMT3BQ9UBC3 853 aaKnown RBP3.64□□□□□ -1.83
MCF2-202ENST00000370573 SAE1Q9UBE0 346 aaPredicted RBP3.64□□□□□ -1.83
MCF2-202ENST00000370573 RNF14Q9UBS8 474 aa3.64□□□□□ -1.83
MCF2-202ENST00000370573 ACSL6Q9UKU0 697 aa3.64□□□□□ -1.83
MCF2-202ENST00000370573 PLA2G2DQ9UNK4 145 aa3.64□□□□□ -1.83
MCF2-202ENST00000370573 SBDSQ9Y3A5 250 aaKnown RBP eCLIP3.64□□□□□ -1.83
MCF2-202ENST00000370573 CCDC195A0A1B0GUA6 201 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 GOLGA6L7A0A1B0GV03 622 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 CTAGE15A4D2H0 777 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 KRIT1O00522 736 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 MAN2B1O00754 1011 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 GSTA4O15217 222 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 LINC01565O15544 149 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 SNX2O60749 519 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 SEMA7AO75326 666 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 GLP2RO95838 553 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 OAS1P00973 400 aaKnown RBP3.63□□□□□ -1.83
MCF2-202ENST00000370573 KLKB1P03952 638 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 LPLP06858 475 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 HNRNPA1P09651 372 aaKnown RBP eCLIP3.63□□□□□ -1.83
MCF2-202ENST00000370573 CTAGE8P0CG41 777 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 MYL4P12829 197 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 GOT1P17174 413 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 PI3P19957 117 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 ENDOUP21128 410 aaKnown RBP3.63□□□□□ -1.83
MCF2-202ENST00000370573 HTR1BP28222 390 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 GABRR2P28476 465 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 HOXA9P31269 272 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 PAFAH1B1P43034 410 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 EPHA5P54756 1037 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 ZXDBP98169 803 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 CKAP4Q07065 602 aaKnown RBP3.63□□□□□ -1.83
MCF2-202ENST00000370573 HYAL1Q12794 435 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 PDK2Q15119 407 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 CNN3Q15417 329 aaKnown RBP3.63□□□□□ -1.83
MCF2-202ENST00000370573 SLC5A9Q2M3M2 681 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 VMACQ2NL98 169 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 PGS1Q32NB8 556 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 LRIT3Q3SXY7 679 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 ANKRD20A8PQ5CZ79 823 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 TFDP3Q5H9I0 405 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 TCEAL5Q5H9L2 206 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 PPP6R3Q5H9R7 873 aaPredicted RBP3.63□□□□□ -1.83
MCF2-202ENST00000370573 SEL1L2Q5TEA6 688 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 TXNDC8Q6A555 127 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 TTC27Q6P3X3 843 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 MZT2AQ6P582 158 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 DARS2Q6PI48 645 aaKnown RBP3.63□□□□□ -1.83
MCF2-202ENST00000370573 RPTNQ6XPR3 784 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 FRMD7Q6ZUT3 714 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 RTL10Q7L3V2 364 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 CTAGE6Q86UF2 777 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 PSTKQ8IV42 348 aaKnown RBP3.63□□□□□ -1.83
MCF2-202ENST00000370573 CCDC50Q8IVM0 306 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 CTAGE4Q8IX94 777 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 ZNF683Q8IZ20 524 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 KRT78Q8N1N4 520 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 MMGT1Q8N4V1 131 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 CEP112Q8N8E3 955 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 ARL14EPQ8N8R7 260 aaPredicted RBP3.63□□□□□ -1.83
MCF2-202ENST00000370573 C1orf54Q8WWF1 131 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 ATG4AQ8WYN0 398 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 FAF2Q96CS3 445 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 MYEOVQ96EZ4 313 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 RBM41Q96IZ5 413 aaKnown RBP3.63□□□□□ -1.83
MCF2-202ENST00000370573 SERPINB11Q96P15 392 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 RNF157Q96PX1 679 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 FAM118BQ9BPY3 351 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 CALN1Q9BXU9 219 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 SLC46A2Q9BY10 475 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 TSPYL1Q9H0U9 437 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 EPC1Q9H2F5 836 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 DHX35Q9H5Z1 703 aaKnown RBP3.63□□□□□ -1.83
MCF2-202ENST00000370573 OLA1Q9NTK5 396 aaKnown RBP3.63□□□□□ -1.83
MCF2-202ENST00000370573 ETNK2Q9NVF9 386 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 NOL12Q9UGY1 213 aaKnown RBP eCLIP3.63□□□□□ -1.83
MCF2-202ENST00000370573 RASAL2Q9UJF2 1139 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 CORO2BQ9UQ03 480 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 MFHAS1Q9Y4C4 1052 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 KCTD3Q9Y597 815 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 V9GYY5 206 aaPredicted RBP3.63□□□□□ -1.83
MCF2-202ENST00000370573 DENND4CQ5VZ89 1909 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 PRRC2BQ5JSZ5 2229 aaKnown RBP3.63□□□□□ -1.83
MCF2-202ENST00000370573 CDH23Q9H251 3354 aa3.63□□□□□ -1.83
MCF2-202ENST00000370573 OBSL1O75147 1896 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms