RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 ATL2Q8NHH9 583 aa7.1□□□□□ -1.27
VPS13A-201ENST00000355766 SH3RF2Q8TEC5 729 aa7.1□□□□□ -1.27
VPS13A-201ENST00000355766 FAM172AQ8WUF8 416 aa7.1□□□□□ -1.27
VPS13A-201ENST00000355766 MAGOHBQ96A72 148 aaKnown RBP7.1□□□□□ -1.27
VPS13A-201ENST00000355766 LRRC45Q96CN5 670 aa7.1□□□□□ -1.27
VPS13A-201ENST00000355766 HAUS1Q96CS2 278 aa7.1□□□□□ -1.27
VPS13A-201ENST00000355766 TRMT2BQ96GJ1 504 aaKnown RBP7.1□□□□□ -1.27
VPS13A-201ENST00000355766 FCRL3Q96P31 734 aaPredicted RBP7.1□□□□□ -1.27
VPS13A-201ENST00000355766 SLC22A12Q96S37 553 aa7.1□□□□□ -1.27
VPS13A-201ENST00000355766 CDK5RAP1Q96SZ6 601 aaKnown RBP7.1□□□□□ -1.27
VPS13A-201ENST00000355766 NPY6RQ99463 290 aa7.1□□□□□ -1.27
VPS13A-201ENST00000355766 MED10Q9BTT4 135 aa7.1□□□□□ -1.27
VPS13A-201ENST00000355766 AP1M1Q9BXS5 423 aa7.1□□□□□ -1.27
VPS13A-201ENST00000355766 DCLK3Q9C098 648 aa7.1□□□□□ -1.27
VPS13A-201ENST00000355766 ZDHHC5Q9C0B5 715 aa7.1□□□□□ -1.27
VPS13A-201ENST00000355766 DDX47Q9H0S4 455 aaKnown RBP7.1□□□□□ -1.27
VPS13A-201ENST00000355766 ZCCHC4Q9H5U6 513 aa7.1□□□□□ -1.27
VPS13A-201ENST00000355766 TRPC7Q9HCX4 862 aa7.1□□□□□ -1.27
VPS13A-201ENST00000355766 MED4Q9NPJ6 270 aa7.1□□□□□ -1.27
VPS13A-201ENST00000355766 IL37Q9NZH6 218 aa7.1□□□□□ -1.27
VPS13A-201ENST00000355766 UBP1Q9NZI7 540 aa7.1□□□□□ -1.27
VPS13A-201ENST00000355766 CALCOCO1Q9P1Z2 691 aa7.1□□□□□ -1.27
VPS13A-201ENST00000355766 WHRNQ9P202 907 aa7.1□□□□□ -1.27
VPS13A-201ENST00000355766 UXTQ9UBK9 157 aaPredicted RBP7.1□□□□□ -1.27
VPS13A-201ENST00000355766 CHORDC1Q9UHD1 332 aaPredicted RBP7.1□□□□□ -1.27
VPS13A-201ENST00000355766 MAGED2Q9UNF1 606 aaPredicted RBP7.1□□□□□ -1.27
VPS13A-201ENST00000355766 ABCA7Q8IZY2 2146 aa7.1□□□□□ -1.27
VPS13A-201ENST00000355766 PLXNB3Q9ULL4 1909 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 RTN3O95197 1032 aaPredicted RBP7.09□□□□□ -1.27
VPS13A-201ENST00000355766 KAT7O95251 611 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 LTFP02788 710 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 SLC2A3P11169 496 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 GABRG2P18507 467 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 KDELR1P24390 212 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 ACAT1P24752 427 aaKnown RBP7.09□□□□□ -1.27
VPS13A-201ENST00000355766 ITPKBP27987 946 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 SSR1P43307 286 aaKnown RBP7.09□□□□□ -1.27
VPS13A-201ENST00000355766 HCAR3P49019 387 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 GPR15P49685 360 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 RGS7P49802 495 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 HDAC4P56524 1084 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 RPL10AP62906 217 aaKnown RBP7.09□□□□□ -1.27
VPS13A-201ENST00000355766 GUCY2DQ02846 1103 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 CFHR1Q03591 330 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 XRCC4Q13426 336 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 ARL13BQ3SXY8 428 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 BRMS1LQ5PSV4 323 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 SLC9A4Q6AI14 798 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 TRNP1Q6NT89 227 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 GK5Q6ZS86 529 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 CROCCP2Q86T23 111 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 KLHL7Q8IXQ5 586 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 EMC1Q8N766 993 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 ZMIZ2Q8NF64 920 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 SLC35B2Q8TB61 432 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 OVCA2Q8WZ82 227 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 NXPE2Q96DL1 559 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 SMOQ99835 787 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 FUT8Q9BYC5 575 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 FRMD8Q9BZ67 464 aaPredicted RBP7.09□□□□□ -1.27
VPS13A-201ENST00000355766 BRD8Q9H0E9 1235 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 LINC00597Q9H2U6 94 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 CLMPQ9H6B4 373 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 RETREG1Q9H6L5 497 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 PCDH9Q9HC56 1237 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 ZDHHC4Q9NPG8 344 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 ABCC13Q9NSE7 274 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 STAU2Q9NUL3 570 aaKnown RBP eCLIP7.09□□□□□ -1.27
VPS13A-201ENST00000355766 SIRT5Q9NXA8 310 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 DONSONQ9NYP3 566 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 CLIC5Q9NZA1 410 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 SMARCAL1Q9NZC9 954 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 MTRF1LQ9UGC7 380 aaKnown RBP7.09□□□□□ -1.27
VPS13A-201ENST00000355766 AMACRQ9UHK6 382 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 GGT7Q9UJ14 662 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 ARHGAP26Q9UNA1 814 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 SCML2Q9UQR0 700 aa7.09□□□□□ -1.27
VPS13A-201ENST00000355766 MUC22E2RYF6 1773 aaPredicted RBP7.09□□□□□ -1.27
VPS13A-201ENST00000355766 C2orf78A6NCI8 922 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 FADS2P1A8MWK0 482 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 TULP2O00295 520 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 MCF2LO15068 1137 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 FLRT2O43155 660 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 TTI1O43156 1089 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 LIASO43766 372 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 ATP2C2O75185 946 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 ZNF217O75362 1048 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 CER1O95813 267 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 IGLV3-25P01717 112 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 APODP05090 189 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 ATXN1LP0C7T5 689 aaKnown RBP7.08□□□□□ -1.28
VPS13A-201ENST00000355766 ZNF883P0CG24 379 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 HLA-EP13747 358 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 GNSP15586 552 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 PI3P19957 117 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 IL1R2P27930 398 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 STIP1P31948 543 aaKnown RBP7.08□□□□□ -1.28
VPS13A-201ENST00000355766 VIPR1P32241 457 aa7.08□□□□□ -1.28
VPS13A-201ENST00000355766 HSPA9P38646 679 aaKnown RBP7.08□□□□□ -1.28
VPS13A-201ENST00000355766 CCNFP41002 786 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms