RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 NUS1Q96E22 293 aa18.4■□□□□ 0.54
CLN3-202ENST00000355477 PDXPQ96GD0 296 aa18.4■□□□□ 0.54
CLN3-202ENST00000355477 PANX2Q96RD6 677 aa18.4■□□□□ 0.54
CLN3-202ENST00000355477 BOCQ9BWV1 1114 aa18.4■□□□□ 0.54
CLN3-202ENST00000355477 MAK16Q9BXY0 300 aaKnown RBP18.4■□□□□ 0.54
CLN3-202ENST00000355477 MRPL40Q9NQ50 206 aaKnown RBP18.4■□□□□ 0.54
CLN3-202ENST00000355477 DDX56Q9NY93 547 aaKnown RBP18.4■□□□□ 0.54
CLN3-202ENST00000355477 KLQ9UEF7 1012 aa18.4■□□□□ 0.54
CLN3-202ENST00000355477 CHKBQ9Y259 395 aa18.4■□□□□ 0.54
CLN3-202ENST00000355477 KIF26BQ2KJY2 2108 aa18.4■□□□□ 0.54
CLN3-202ENST00000355477 CPED1A4D0V7 1026 aa18.39■□□□□ 0.53
CLN3-202ENST00000355477 SPOPO43791 374 aa18.39■□□□□ 0.53
CLN3-202ENST00000355477 OPA1O60313 960 aa18.39■□□□□ 0.53
CLN3-202ENST00000355477 RASGRP1O95267 797 aa18.39■□□□□ 0.53
CLN3-202ENST00000355477 ANXA6P08133 673 aa18.39■□□□□ 0.53
CLN3-202ENST00000355477 MMP2P08253 660 aa18.39■□□□□ 0.53
CLN3-202ENST00000355477 HOXC4P09017 264 aaPredicted RBP18.39■□□□□ 0.53
CLN3-202ENST00000355477 CES1P23141 567 aa18.39■□□□□ 0.53
CLN3-202ENST00000355477 DUSP3P51452 185 aaPredicted RBP18.39■□□□□ 0.53
CLN3-202ENST00000355477 KIAA1024LP59773 190 aa18.39■□□□□ 0.53
CLN3-202ENST00000355477 DYNLT1P63172 113 aa18.39■□□□□ 0.53
CLN3-202ENST00000355477 ZBTB17Q13105 803 aa18.39■□□□□ 0.53
CLN3-202ENST00000355477 LLGL1Q15334 1064 aa18.39■□□□□ 0.53
CLN3-202ENST00000355477 GUSBP11Q6P575 273 aa18.39■□□□□ 0.53
CLN3-202ENST00000355477 CRTC1Q6UUV9 634 aa18.39■□□□□ 0.53
CLN3-202ENST00000355477 Q6ZVL8 140 aa18.39■□□□□ 0.53
CLN3-202ENST00000355477 USP45Q70EL2 814 aa18.39■□□□□ 0.53
CLN3-202ENST00000355477 B4GALNT4Q76KP1 1039 aa18.39■□□□□ 0.53
CLN3-202ENST00000355477 RFX6Q8HWS3 928 aa18.39■□□□□ 0.53
CLN3-202ENST00000355477 SLC35F3Q8IY50 421 aa18.39■□□□□ 0.53
CLN3-202ENST00000355477 IFI44Q8TCB0 444 aa18.39■□□□□ 0.53
CLN3-202ENST00000355477 OR1E3Q8WZA6 343 aa18.39■□□□□ 0.53
CLN3-202ENST00000355477 DTD2Q96FN9 168 aa18.39■□□□□ 0.53
CLN3-202ENST00000355477 ZNF830Q96NB3 372 aaPredicted RBP18.39■□□□□ 0.53
CLN3-202ENST00000355477 USP29Q9HBJ7 922 aa18.39■□□□□ 0.53
CLN3-202ENST00000355477 FGF22Q9HCT0 170 aa18.39■□□□□ 0.53
CLN3-202ENST00000355477 UNC13CQ8NB66 2214 aa18.38■□□□□ 0.53
CLN3-202ENST00000355477 A0A0J9YYE9 177 aa18.38■□□□□ 0.53
CLN3-202ENST00000355477 RCCD1A6NED2 376 aa18.38■□□□□ 0.53
CLN3-202ENST00000355477 SOWAHDA6NJG2 315 aa18.38■□□□□ 0.53
CLN3-202ENST00000355477 PSMD11O00231 422 aa18.38■□□□□ 0.53
CLN3-202ENST00000355477 CACNB4O00305 520 aaPredicted RBP18.38■□□□□ 0.53
CLN3-202ENST00000355477 TRBC1P01850 177 aa18.38■□□□□ 0.53
CLN3-202ENST00000355477 GP1BAP07359 652 aa18.38■□□□□ 0.53
CLN3-202ENST00000355477 CTSEP14091 401 aa18.38■□□□□ 0.53
CLN3-202ENST00000355477 FECHP22830 423 aa18.38■□□□□ 0.53
CLN3-202ENST00000355477 CDKN2BP42772 138 aa18.38■□□□□ 0.53
CLN3-202ENST00000355477 IFI35P80217 286 aaPredicted RBP18.38■□□□□ 0.53
CLN3-202ENST00000355477 PTSQ03393 145 aa18.38■□□□□ 0.53
CLN3-202ENST00000355477 AP1B1Q10567 949 aa18.38■□□□□ 0.53
CLN3-202ENST00000355477 ARHGEF7Q14155 803 aa18.38■□□□□ 0.53
CLN3-202ENST00000355477 SPA17Q15506 151 aa18.38■□□□□ 0.53
CLN3-202ENST00000355477 TAZQ16635 292 aa18.38■□□□□ 0.53
CLN3-202ENST00000355477 C6orf132Q5T0Z8 1188 aa18.38■□□□□ 0.53
CLN3-202ENST00000355477 TECPR1Q7Z6L1 1165 aa18.38■□□□□ 0.53
CLN3-202ENST00000355477 FSTL5Q8N475 847 aaPredicted RBP18.38■□□□□ 0.53
CLN3-202ENST00000355477 DCBLD1Q8N8Z6 715 aa18.38■□□□□ 0.53
CLN3-202ENST00000355477 OR56A4Q8NGH8 313 aa18.38■□□□□ 0.53
CLN3-202ENST00000355477 OLFM3Q96PB7 478 aa18.38■□□□□ 0.53
CLN3-202ENST00000355477 TDRD1Q9BXT4 1180 aaKnown RBP18.38■□□□□ 0.53
CLN3-202ENST00000355477 CEP41Q9BYV8 373 aa18.38■□□□□ 0.53
CLN3-202ENST00000355477 WDR26Q9H7D7 661 aa18.38■□□□□ 0.53
CLN3-202ENST00000355477 SAE1Q9UBE0 346 aaPredicted RBP18.38■□□□□ 0.53
CLN3-202ENST00000355477 CLCA2Q9UQC9 943 aa18.38■□□□□ 0.53
CLN3-202ENST00000355477 EPN1Q9Y6I3 576 aaPredicted RBP18.38■□□□□ 0.53
CLN3-202ENST00000355477 DGKBQ9Y6T7 804 aa18.38■□□□□ 0.53
CLN3-202ENST00000355477 ZFC3H1O60293 1989 aaKnown RBP18.38■□□□□ 0.53
CLN3-202ENST00000355477 FAM208BQ5VWN6 2430 aa18.37■□□□□ 0.53
CLN3-202ENST00000355477 EME2A4GXA9 379 aaPredicted RBP18.37■□□□□ 0.53
CLN3-202ENST00000355477 CASC3O15234 703 aaKnown RBP18.37■□□□□ 0.53
CLN3-202ENST00000355477 MT-CO3P00414 261 aa18.37■□□□□ 0.53
CLN3-202ENST00000355477 TNFP01375 233 aa18.37■□□□□ 0.53
CLN3-202ENST00000355477 KRT10P13645 584 aa18.37■□□□□ 0.53
CLN3-202ENST00000355477 ZFXP17010 805 aaPredicted RBP18.37■□□□□ 0.53
CLN3-202ENST00000355477 NFKBIAP25963 317 aa18.37■□□□□ 0.53
CLN3-202ENST00000355477 CYLC1P35663 651 aaPredicted RBP18.37■□□□□ 0.53
CLN3-202ENST00000355477 CD86P42081 329 aa18.37■□□□□ 0.53
CLN3-202ENST00000355477 MARCKSL1P49006 195 aa18.37■□□□□ 0.53
CLN3-202ENST00000355477 EPHB1P54762 984 aa18.37■□□□□ 0.53
CLN3-202ENST00000355477 SKOR1P84550 965 aa18.37■□□□□ 0.53
CLN3-202ENST00000355477 ADCY2Q08462 1091 aa18.37■□□□□ 0.53
CLN3-202ENST00000355477 PDK1Q15118 436 aa18.37■□□□□ 0.53
CLN3-202ENST00000355477 ELOCQ15369 112 aa18.37■□□□□ 0.53
CLN3-202ENST00000355477 NR0B2Q15466 257 aa18.37■□□□□ 0.53
CLN3-202ENST00000355477 ODF2Q5BJF6 829 aa18.37■□□□□ 0.53
CLN3-202ENST00000355477 CDCP2Q5VXM1 449 aa18.37■□□□□ 0.53
CLN3-202ENST00000355477 LRRC66Q68CR7 880 aa18.37■□□□□ 0.53
CLN3-202ENST00000355477 EFL1Q7Z2Z2 1120 aaKnown RBP18.37■□□□□ 0.53
CLN3-202ENST00000355477 CACTIN-AS1Q8N1I8 211 aa18.37■□□□□ 0.53
CLN3-202ENST00000355477 ATL2Q8NHH9 583 aa18.37■□□□□ 0.53
CLN3-202ENST00000355477 RBM15Q96T37 977 aaKnown RBP eCLIP18.37■□□□□ 0.53
CLN3-202ENST00000355477 TEX101Q9BY14 249 aa18.37■□□□□ 0.53
CLN3-202ENST00000355477 PCDH9Q9HC56 1237 aa18.37■□□□□ 0.53
CLN3-202ENST00000355477 HAUS2Q9NVX0 235 aa18.37■□□□□ 0.53
CLN3-202ENST00000355477 NCKIPSDQ9NZQ3 722 aa18.37■□□□□ 0.53
CLN3-202ENST00000355477 DKK4Q9UBT3 224 aa18.37■□□□□ 0.53
CLN3-202ENST00000355477 CD84Q9UIB8 345 aa18.37■□□□□ 0.53
CLN3-202ENST00000355477 A0A0A6YYK5 440 aaPredicted RBP18.36■□□□□ 0.53
CLN3-202ENST00000355477 TNFRSF10CO14798 259 aa18.36■□□□□ 0.53
CLN3-202ENST00000355477 PSTPIP1O43586 416 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms