RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 RCCD1A6NED2 376 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 ZBTB42B2RXF5 422 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 PRMT5O14744 637 aaPredicted RBP10.17□□□□□ -0.78
USP54-201ENST00000339859 AVILO75366 819 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 GSRP00390 522 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 ABHD2P08910 425 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 DLDP09622 509 aaKnown RBP10.17□□□□□ -0.78
USP54-201ENST00000339859 GNPDA1P46926 289 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 MLLT6P55198 1093 aaPredicted RBP10.17□□□□□ -0.78
USP54-201ENST00000339859 EIF4HQ15056 248 aaKnown RBP10.17□□□□□ -0.78
USP54-201ENST00000339859 CNSTQ6PJW8 725 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 UBE2R2Q712K3 238 aaPredicted RBP10.17□□□□□ -0.78
USP54-201ENST00000339859 LINGO1Q96FE5 620 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 RAB11FIP5Q9BXF6 653 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 UNKQ9C0B0 810 aaKnown RBP10.17□□□□□ -0.78
USP54-201ENST00000339859 TMBIM4Q9HC24 238 aa10.17□□□□□ -0.78
USP54-201ENST00000339859 CORO1CQ9ULV4 474 aaPredicted RBP10.17□□□□□ -0.78
USP54-201ENST00000339859 KIAA1551Q9HCM1 1747 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 MLYCDO95822 493 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 ENO1P06733 434 aaKnown RBP10.16□□□□□ -0.78
USP54-201ENST00000339859 DRD1P21728 446 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 CMPK1P30085 196 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 ZNF132P52740 706 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 ACTN3Q08043 901 aaPredicted RBP10.16□□□□□ -0.78
USP54-201ENST00000339859 C1orf146Q5VVC0 180 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 SLC2A13Q96QE2 648 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 PARVBQ9HBI1 364 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 FAM237BA0A1B0GVD1 139 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 NEMP2A6NFY4 417 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 ARRB1P49407 418 aaPredicted RBP10.16□□□□□ -0.78
USP54-201ENST00000339859 ANO7Q6IWH7 933 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 CAPN13Q6MZZ7 669 aaPredicted RBP10.16□□□□□ -0.78
USP54-201ENST00000339859 FAM171BQ6P995 826 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 ALG9Q9H6U8 611 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 AJAP1Q9UKB5 411 aaPredicted RBP10.16□□□□□ -0.78
USP54-201ENST00000339859 C2orf78A6NCI8 922 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 F8W810 466 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 ZNF217O75362 1048 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 SERPINE1P05121 402 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 CD48P09326 243 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 CCDC166P0CW27 439 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 DNAL1Q4LDG9 190 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 FNBP1LQ5T0N5 605 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 ANKRD54Q6NXT1 300 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 ENPP7Q6UWV6 458 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 TMC3Q7Z5M5 1100 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 VN1R2Q8NFZ6 395 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 ZSCAN5AQ9BUG6 496 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 HAPLN2Q9GZV7 340 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 GGT7Q9UJ14 662 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 LINC01553A4QN01 128 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 SNUPNO95149 360 aaKnown RBP10.16□□□□□ -0.78
USP54-201ENST00000339859 CPSF4O95639 269 aaKnown RBP10.16□□□□□ -0.78
USP54-201ENST00000339859 NDUFS1P28331 727 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 TNFRSF8P28908 595 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 CCNFP41002 786 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 PON2Q15165 354 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 CERCAMQ5T4B2 595 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 ATAD3BQ5T9A4 648 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 METTL6Q8TCB7 284 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 RAB7BQ96AH8 199 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 NPY6RQ99463 290 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 GSDMCQ9BYG8 508 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 RAD21L1Q9H4I0 556 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 PSME2Q9UL46 239 aa10.16□□□□□ -0.78
USP54-201ENST00000339859 TULP2O00295 520 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 TRIM13O60858 407 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 STX5Q13190 355 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 CA9Q16790 459 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 Q6ZVU0 165 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 ARMCX6Q7L4S7 300 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 RABEPKQ7Z6M1 372 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 NKD2Q969F2 451 aaPredicted RBP10.15□□□□□ -0.78
USP54-201ENST00000339859 BORCS6Q96GS4 357 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 STRA6Q9BX79 667 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 CEP44Q9C0F1 390 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 DNAJC28Q9NX36 388 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 QSER1Q2KHR3 1735 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 H3BQ06 376 aaPredicted RBP10.15□□□□□ -0.78
USP54-201ENST00000339859 IFNA14P01570 189 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 GUCY1A3Q02108 690 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 LHX8Q68G74 356 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 KBTBD6Q86V97 674 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 LRRC15Q8TF66 581 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 USP7Q93009 1102 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 LRIG1Q96JA1 1093 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 FCRL5Q96RD9 977 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 NDNQ99608 321 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 ACE2Q9BYF1 805 aaPredicted RBP10.15□□□□□ -0.78
USP54-201ENST00000339859 POLR3BQ9NW08 1133 aaPredicted RBP10.15□□□□□ -0.78
USP54-201ENST00000339859 ELOVL2Q9NXB9 296 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 FBXO5Q9UKT4 447 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 SEC22BO75396 215 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 PIGNO95427 931 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 ITGAXP20702 1163 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 NRLP54845 237 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 SKOR1P84550 965 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 DEFB123Q8N688 67 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 RDH11Q8TC12 318 aa10.15□□□□□ -0.78
USP54-201ENST00000339859 KLK6Q92876 244 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms