RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 HERC3Q15034 1050 aa16.09■□□□□ 0.17
NPHP3-201ENST00000337331 GOLM1Q8NBJ4 401 aa16.09■□□□□ 0.17
NPHP3-201ENST00000337331 TMEM246Q9BRR3 403 aa16.09■□□□□ 0.17
NPHP3-201ENST00000337331 COMMD8Q9NX08 183 aa16.09■□□□□ 0.17
NPHP3-201ENST00000337331 COQ3Q9NZJ6 369 aa16.09■□□□□ 0.17
NPHP3-201ENST00000337331 H2AFY2Q9P0M6 372 aaPredicted RBP16.09■□□□□ 0.17
NPHP3-201ENST00000337331 SPO11Q9Y5K1 396 aa16.09■□□□□ 0.17
NPHP3-201ENST00000337331 PIK3C2AO00443 1686 aa16.09■□□□□ 0.17
NPHP3-201ENST00000337331 ALDH2P05091 517 aa16.09■□□□□ 0.17
NPHP3-201ENST00000337331 CHRNB1P11230 501 aa16.09■□□□□ 0.17
NPHP3-201ENST00000337331 CEP78Q5JTW2 689 aa16.09■□□□□ 0.17
NPHP3-201ENST00000337331 PCID2Q5JVF3 399 aa16.09■□□□□ 0.17
NPHP3-201ENST00000337331 GALNT12Q8IXK2 581 aa16.09■□□□□ 0.17
NPHP3-201ENST00000337331 GRPEL2Q8TAA5 225 aa16.09■□□□□ 0.17
NPHP3-201ENST00000337331 PHF21AQ96BD5 680 aa16.09■□□□□ 0.17
NPHP3-201ENST00000337331 B3GNT5Q9BYG0 378 aa16.09■□□□□ 0.17
NPHP3-201ENST00000337331 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16.09■□□□□ 0.17
NPHP3-201ENST00000337331 UCKL1Q9NWZ5 548 aa16.09■□□□□ 0.17
NPHP3-201ENST00000337331 EHD3Q9NZN3 535 aa16.09■□□□□ 0.17
NPHP3-201ENST00000337331 LIMD1Q9UGP4 676 aa16.09■□□□□ 0.17
NPHP3-201ENST00000337331 RIPK3Q9Y572 518 aa16.09■□□□□ 0.17
NPHP3-201ENST00000337331 PCDHA11Q9Y5I1 949 aa16.09■□□□□ 0.17
NPHP3-201ENST00000337331 H7C4K7 107 aa16.09■□□□□ 0.17
NPHP3-201ENST00000337331 AREL1O15033 823 aa16.09■□□□□ 0.17
NPHP3-201ENST00000337331 PFKFB4Q16877 469 aa16.09■□□□□ 0.17
NPHP3-201ENST00000337331 PPP1R26Q5T8A7 1209 aaPredicted RBP16.09■□□□□ 0.17
NPHP3-201ENST00000337331 NECAB2Q7Z6G3 386 aa16.09■□□□□ 0.17
NPHP3-201ENST00000337331 STX19Q8N4C7 294 aa16.09■□□□□ 0.17
NPHP3-201ENST00000337331 ZNF347Q96SE7 839 aa16.09■□□□□ 0.17
NPHP3-201ENST00000337331 MAGEE1Q9HCI5 957 aa16.09■□□□□ 0.17
NPHP3-201ENST00000337331 IFT80Q9P2H3 777 aaPredicted RBP16.09■□□□□ 0.17
NPHP3-201ENST00000337331 SNX8Q9Y5X2 465 aa16.09■□□□□ 0.17
NPHP3-201ENST00000337331 IGLV3-22A0A075B6J6 115 aa16.08■□□□□ 0.17
NPHP3-201ENST00000337331 LRCH4O75427 683 aa16.08■□□□□ 0.17
NPHP3-201ENST00000337331 TMEM63AO94886 807 aa16.08■□□□□ 0.17
NPHP3-201ENST00000337331 LRG1P02750 347 aa16.08■□□□□ 0.17
NPHP3-201ENST00000337331 EPB42P16452 691 aa16.08■□□□□ 0.17
NPHP3-201ENST00000337331 YWHAQP27348 245 aa16.08■□□□□ 0.17
NPHP3-201ENST00000337331 GRIA4P48058 902 aa16.08■□□□□ 0.17
NPHP3-201ENST00000337331 SLC9B1Q4ZJI4 515 aa16.08■□□□□ 0.17
NPHP3-201ENST00000337331 SLC41A1Q8IVJ1 513 aa16.08■□□□□ 0.17
NPHP3-201ENST00000337331 LILRB4Q8NHJ6 448 aa16.08■□□□□ 0.17
NPHP3-201ENST00000337331 KCTD4Q8WVF5 259 aa16.08■□□□□ 0.17
NPHP3-201ENST00000337331 FBXL20Q96IG2 436 aa16.08■□□□□ 0.17
NPHP3-201ENST00000337331 DHX33Q9H6R0 707 aaKnown RBP16.08■□□□□ 0.17
NPHP3-201ENST00000337331 MYH7P12883 1935 aa16.08■□□□□ 0.17
NPHP3-201ENST00000337331 NID2Q14112 1375 aa16.08■□□□□ 0.16
NPHP3-201ENST00000337331 ATP6AP2A0A1C7CYW4 349 aa16.08■□□□□ 0.16
NPHP3-201ENST00000337331 TCRBV7S3A2A0A539 114 aa16.08■□□□□ 0.16
NPHP3-201ENST00000337331 H3BMQ9 156 aa16.08■□□□□ 0.16
NPHP3-201ENST00000337331 HS6ST1O60243 411 aa16.08■□□□□ 0.16
NPHP3-201ENST00000337331 NOS1APO75052 506 aaPredicted RBP16.08■□□□□ 0.16
NPHP3-201ENST00000337331 ATP6AP2O75787 350 aa16.08■□□□□ 0.16
NPHP3-201ENST00000337331 RGS20O76081 388 aa16.08■□□□□ 0.16
NPHP3-201ENST00000337331 PRKD3O94806 890 aa16.08■□□□□ 0.16
NPHP3-201ENST00000337331 KLRC2P26717 231 aa16.08■□□□□ 0.16
NPHP3-201ENST00000337331 MAPK1P28482 360 aa16.08■□□□□ 0.16
NPHP3-201ENST00000337331 FCGRTP55899 365 aa16.08■□□□□ 0.16
NPHP3-201ENST00000337331 NFATC3Q12968 1075 aa16.08■□□□□ 0.16
NPHP3-201ENST00000337331 PMS2P3Q13401 168 aa16.08■□□□□ 0.16
NPHP3-201ENST00000337331 HSDL1Q3SXM5 330 aa16.08■□□□□ 0.16
NPHP3-201ENST00000337331 ATAD3BQ5T9A4 648 aa16.08■□□□□ 0.16
NPHP3-201ENST00000337331 FAM171A1Q5VUB5 890 aa16.08■□□□□ 0.16
NPHP3-201ENST00000337331 MINDY2Q8NBR6 621 aa16.08■□□□□ 0.16
NPHP3-201ENST00000337331 COG8Q96MW5 612 aa16.08■□□□□ 0.16
NPHP3-201ENST00000337331 KLF11O14901 512 aa16.08■□□□□ 0.16
NPHP3-201ENST00000337331 PRDX6P30041 224 aa16.08■□□□□ 0.16
NPHP3-201ENST00000337331 PSEN2P49810 448 aa16.08■□□□□ 0.16
NPHP3-201ENST00000337331 SCNN1GP51170 649 aa16.08■□□□□ 0.16
NPHP3-201ENST00000337331 GDF10P55107 478 aa16.08■□□□□ 0.16
NPHP3-201ENST00000337331 BEX3Q00994 111 aa16.08■□□□□ 0.16
NPHP3-201ENST00000337331 ILF2Q12905 390 aaKnown RBP16.08■□□□□ 0.16
NPHP3-201ENST00000337331 RETSATQ6NUM9 610 aa16.08■□□□□ 0.16
NPHP3-201ENST00000337331 ZDHHC13Q8IUH4 622 aa16.08■□□□□ 0.16
NPHP3-201ENST00000337331 ZNF420Q8TAQ5 688 aaPredicted RBP16.08■□□□□ 0.16
NPHP3-201ENST00000337331 CANT1Q8WVQ1 401 aa16.08■□□□□ 0.16
NPHP3-201ENST00000337331 SLC35B4Q969S0 331 aa16.08■□□□□ 0.16
NPHP3-201ENST00000337331 NXNL1Q96CM4 212 aa16.08■□□□□ 0.16
NPHP3-201ENST00000337331 SMPD3Q9NY59 655 aaPredicted RBP16.08■□□□□ 0.16
NPHP3-201ENST00000337331 CCDC154A6NI56 674 aa16.08■□□□□ 0.16
NPHP3-201ENST00000337331 ARF4P18085 180 aaPredicted RBP16.08■□□□□ 0.16
NPHP3-201ENST00000337331 TSPAN8P19075 237 aa16.08■□□□□ 0.16
NPHP3-201ENST00000337331 ADSLP30566 484 aaPredicted RBP16.08■□□□□ 0.16
NPHP3-201ENST00000337331 ZNF135P52742 658 aaPredicted RBP16.08■□□□□ 0.16
NPHP3-201ENST00000337331 SIX1Q15475 284 aaPredicted RBP16.08■□□□□ 0.16
NPHP3-201ENST00000337331 LSM12Q3MHD2 195 aaKnown RBP16.08■□□□□ 0.16
NPHP3-201ENST00000337331 C16orf62Q7Z3J2 963 aa16.08■□□□□ 0.16
NPHP3-201ENST00000337331 TRIM69Q86WT6 500 aa16.08■□□□□ 0.16
NPHP3-201ENST00000337331 YAF2Q8IY57 180 aa16.08■□□□□ 0.16
NPHP3-201ENST00000337331 FIBCD1Q8N539 461 aa16.08■□□□□ 0.16
NPHP3-201ENST00000337331 CLCA2Q9UQC9 943 aa16.08■□□□□ 0.16
NPHP3-201ENST00000337331 IFT52Q9Y366 437 aa16.08■□□□□ 0.16
NPHP3-201ENST00000337331 N6AMT1Q9Y5N5 214 aa16.08■□□□□ 0.16
NPHP3-201ENST00000337331 PNMA8CA0A1B0GUJ8 204 aa16.07■□□□□ 0.16
NPHP3-201ENST00000337331 LZTS3O60299 673 aaPredicted RBP16.07■□□□□ 0.16
NPHP3-201ENST00000337331 ATP5F1P24539 256 aaPredicted RBP16.07■□□□□ 0.16
NPHP3-201ENST00000337331 FMO4P31512 558 aa16.07■□□□□ 0.16
NPHP3-201ENST00000337331 CTBP1Q13363 440 aa16.07■□□□□ 0.16
NPHP3-201ENST00000337331 PRMT9Q6P2P2 845 aa16.07■□□□□ 0.16
NPHP3-201ENST00000337331 ABHD15Q6UXT9 468 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms