RNA–Protein interactions for RNA: ENST00000298130.4

SPTSSA-201, Transcript of serine palmitoyltransferase small subunit A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTSSA, Length 2,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTSSA-201ENST00000298130 PIP5K1BO14986 540 aa24.42■■□□□ 1.5
SPTSSA-201ENST00000298130 MLLT6P55198 1093 aaPredicted RBP24.42■■□□□ 1.5
SPTSSA-201ENST00000298130 ZNF33AQ06730 810 aa24.42■■□□□ 1.5
SPTSSA-201ENST00000298130 EFEMP1Q12805 493 aa24.42■■□□□ 1.5
SPTSSA-201ENST00000298130 BRMS1LQ5PSV4 323 aa24.42■■□□□ 1.5
SPTSSA-201ENST00000298130 AFAP1L2Q8N4X5 818 aa24.42■■□□□ 1.5
SPTSSA-201ENST00000298130 LZTR1Q8N653 840 aa24.42■■□□□ 1.5
SPTSSA-201ENST00000298130 RSPH1Q8WYR4 309 aa24.42■■□□□ 1.5
SPTSSA-201ENST00000298130 ZFRQ96KR1 1074 aaKnown RBP24.42■■□□□ 1.5
SPTSSA-201ENST00000298130 RANBP9Q96S59 729 aa24.42■■□□□ 1.5
SPTSSA-201ENST00000298130 SLC25A23Q9BV35 468 aa24.42■■□□□ 1.5
SPTSSA-201ENST00000298130 PRKD2Q9BZL6 878 aa24.42■■□□□ 1.5
SPTSSA-201ENST00000298130 V9GYQ6 96 aa24.42■■□□□ 1.5
SPTSSA-201ENST00000298130 NCF1BA6NI72 391 aaPredicted RBP24.42■■□□□ 1.5
SPTSSA-201ENST00000298130 NCF1CA8MVU1 366 aaPredicted RBP24.42■■□□□ 1.5
SPTSSA-201ENST00000298130 H3BMM5 538 aa24.42■■□□□ 1.5
SPTSSA-201ENST00000298130 NCF1P14598 390 aaPredicted RBP24.42■■□□□ 1.5
SPTSSA-201ENST00000298130 USP46P62068 366 aa24.42■■□□□ 1.5
SPTSSA-201ENST00000298130 OR4D1Q15615 310 aa24.42■■□□□ 1.5
SPTSSA-201ENST00000298130 DCBLD1Q8N8Z6 715 aa24.42■■□□□ 1.5
SPTSSA-201ENST00000298130 PTCD2Q8WV60 388 aaKnown RBP24.42■■□□□ 1.5
SPTSSA-201ENST00000298130 ESAMQ96AP7 390 aa24.42■■□□□ 1.5
SPTSSA-201ENST00000298130 EPB41L1Q9H4G0 881 aa24.42■■□□□ 1.5
SPTSSA-201ENST00000298130 PIF1Q9H611 641 aa24.42■■□□□ 1.5
SPTSSA-201ENST00000298130 MRM3Q9HC36 420 aaKnown RBP24.42■■□□□ 1.5
SPTSSA-201ENST00000298130 NDUFA13Q9P0J0 144 aa24.42■■□□□ 1.5
SPTSSA-201ENST00000298130 TMEM181Q9P2C4 612 aa24.42■■□□□ 1.5
SPTSSA-201ENST00000298130 MAP10Q9P2G4 905 aa24.42■■□□□ 1.5
SPTSSA-201ENST00000298130 NME4O00746 187 aa24.41■■□□□ 1.5
SPTSSA-201ENST00000298130 B4GALT3O60512 393 aa24.41■■□□□ 1.5
SPTSSA-201ENST00000298130 MT-ND1P03886 318 aa24.41■■□□□ 1.5
SPTSSA-201ENST00000298130 CAPN3P20807 821 aa24.41■■□□□ 1.5
SPTSSA-201ENST00000298130 HOXC13P31276 330 aa24.41■■□□□ 1.5
SPTSSA-201ENST00000298130 POLD2P49005 469 aa24.41■■□□□ 1.5
SPTSSA-201ENST00000298130 TMEM126BQ8IUX1 230 aa24.41■■□□□ 1.5
SPTSSA-201ENST00000298130 NUP93Q8N1F7 819 aa24.41■■□□□ 1.5
SPTSSA-201ENST00000298130 TTC9BQ8N6N2 239 aa24.41■■□□□ 1.5
SPTSSA-201ENST00000298130 FAM47BQ8NA70 645 aa24.41■■□□□ 1.5
SPTSSA-201ENST00000298130 IGSF8Q969P0 613 aa24.41■■□□□ 1.5
SPTSSA-201ENST00000298130 ZNF597Q96LX8 424 aa24.41■■□□□ 1.5
SPTSSA-201ENST00000298130 PADI3Q9ULW8 664 aa24.41■■□□□ 1.5
SPTSSA-201ENST00000298130 TIMM22Q9Y584 194 aa24.41■■□□□ 1.5
SPTSSA-201ENST00000298130 KLHL33A6NCF5 533 aa24.41■■□□□ 1.5
SPTSSA-201ENST00000298130 FAM163BP0C2L3 166 aa24.41■■□□□ 1.5
SPTSSA-201ENST00000298130 RANBP1P43487 201 aa24.41■■□□□ 1.5
SPTSSA-201ENST00000298130 STX1BP61266 288 aa24.41■■□□□ 1.5
SPTSSA-201ENST00000298130 PRKCQQ04759 706 aa24.41■■□□□ 1.5
SPTSSA-201ENST00000298130 MAPRE2Q15555 327 aa24.41■■□□□ 1.5
SPTSSA-201ENST00000298130 MYEOVQ96EZ4 313 aa24.41■■□□□ 1.5
SPTSSA-201ENST00000298130 POLR3BQ9NW08 1133 aaPredicted RBP24.41■■□□□ 1.5
SPTSSA-201ENST00000298130 FAM50BQ9Y247 325 aa24.41■■□□□ 1.5
SPTSSA-201ENST00000298130 TNFRSF10BO14763 440 aa24.4■■□□□ 1.5
SPTSSA-201ENST00000298130 HTRA2O43464 458 aaPredicted RBP24.4■■□□□ 1.5
SPTSSA-201ENST00000298130 CDK14O94921 469 aa24.4■■□□□ 1.5
SPTSSA-201ENST00000298130 CYP2C18P33260 490 aa24.4■■□□□ 1.5
SPTSSA-201ENST00000298130 THPOP40225 353 aa24.4■■□□□ 1.5
SPTSSA-201ENST00000298130 NDST2P52849 883 aa24.4■■□□□ 1.5
SPTSSA-201ENST00000298130 RAP1GAP2Q684P5 730 aa24.4■■□□□ 1.5
SPTSSA-201ENST00000298130 KIAA0408Q6ZU52 694 aa24.4■■□□□ 1.5
SPTSSA-201ENST00000298130 CEPT1Q9Y6K0 416 aa24.4■■□□□ 1.5
SPTSSA-201ENST00000298130 TCRBV3S1A0A5B6 114 aa24.4■■□□□ 1.5
SPTSSA-201ENST00000298130 UNCXA6NJT0 531 aa24.4■■□□□ 1.5
SPTSSA-201ENST00000298130 GOT2P00505 430 aaKnown RBP24.4■■□□□ 1.5
SPTSSA-201ENST00000298130 CAPNS1P04632 268 aa24.4■■□□□ 1.5
SPTSSA-201ENST00000298130 GPX3P22352 226 aa24.4■■□□□ 1.5
SPTSSA-201ENST00000298130 CASP2P42575 452 aa24.4■■□□□ 1.5
SPTSSA-201ENST00000298130 TSPY1Q01534 308 aa24.4■■□□□ 1.5
SPTSSA-201ENST00000298130 UGT3A2Q3SY77 523 aa24.4■■□□□ 1.5
SPTSSA-201ENST00000298130 MORN1Q5T089 497 aa24.4■■□□□ 1.5
SPTSSA-201ENST00000298130 CALML6Q8TD86 181 aa24.4■■□□□ 1.5
SPTSSA-201ENST00000298130 FAR2Q96K12 515 aa24.4■■□□□ 1.5
SPTSSA-201ENST00000298130 SEMA4BQ9NPR2 832 aaPredicted RBP24.4■■□□□ 1.5
SPTSSA-201ENST00000298130 OLAHQ9NV23 265 aa24.4■■□□□ 1.5
SPTSSA-201ENST00000298130 CROCCQ5TZA2 2017 aa24.4■■□□□ 1.5
SPTSSA-201ENST00000298130 SLC7A1P30825 629 aa24.39■■□□□ 1.5
SPTSSA-201ENST00000298130 ACVRL1P37023 503 aa24.39■■□□□ 1.5
SPTSSA-201ENST00000298130 HSPA13P48723 471 aa24.39■■□□□ 1.5
SPTSSA-201ENST00000298130 SAMD4BQ5PRF9 694 aaKnown RBP24.39■■□□□ 1.5
SPTSSA-201ENST00000298130 TAF2Q6P1X5 1199 aa24.39■■□□□ 1.5
SPTSSA-201ENST00000298130 CBR4Q8N4T8 237 aa24.39■■□□□ 1.5
SPTSSA-201ENST00000298130 TUBGCP3Q96CW5 907 aa24.39■■□□□ 1.5
SPTSSA-201ENST00000298130 CCDC126Q96EE4 140 aa24.39■■□□□ 1.5
SPTSSA-201ENST00000298130 TUBB1Q9H4B7 451 aa24.39■■□□□ 1.5
SPTSSA-201ENST00000298130 DMTF1Q9Y222 760 aa24.39■■□□□ 1.5
SPTSSA-201ENST00000298130 GIT1Q9Y2X7 761 aa24.39■■□□□ 1.5
SPTSSA-201ENST00000298130 MUSKO15146 869 aa24.39■■□□□ 1.49
SPTSSA-201ENST00000298130 MTHFD1P11586 935 aaKnown RBP24.39■■□□□ 1.49
SPTSSA-201ENST00000298130 CDH2P19022 906 aaPredicted RBP24.39■■□□□ 1.49
SPTSSA-201ENST00000298130 OXTRP30559 389 aa24.39■■□□□ 1.49
SPTSSA-201ENST00000298130 RPL9P32969 192 aaKnown RBP24.39■■□□□ 1.49
SPTSSA-201ENST00000298130 RENBPP51606 427 aa24.39■■□□□ 1.49
SPTSSA-201ENST00000298130 NR1H2P55055 460 aa24.39■■□□□ 1.49
SPTSSA-201ENST00000298130 DIO3P55073 304 aa24.39■■□□□ 1.49
SPTSSA-201ENST00000298130 TIAL1Q01085 375 aaKnown RBP eCLIP24.39■■□□□ 1.492e-7■■□□□ 11.7
SPTSSA-201ENST00000298130 FUT11Q495W5 492 aa24.39■■□□□ 1.49
SPTSSA-201ENST00000298130 LRRC23Q53EV4 343 aaPredicted RBP24.39■■□□□ 1.49
SPTSSA-201ENST00000298130 AFMIDQ63HM1 303 aa24.39■■□□□ 1.49
SPTSSA-201ENST00000298130 TWIST2Q8WVJ9 160 aa24.39■■□□□ 1.49
SPTSSA-201ENST00000298130 VPS33AQ96AX1 596 aa24.39■■□□□ 1.49
SPTSSA-201ENST00000298130 TSPAN17Q96FV3 270 aa24.39■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms