RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 TBX18O95935 607 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 PRSS56P0CW18 603 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 ODC1P11926 461 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 YAP1P46937 504 aaKnown RBP12.66□□□□□ -0.38
LIG1-201ENST00000263274 NDST2P52849 883 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 CDKN2DP55273 166 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 GRB7Q14451 532 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 NEDD8Q15843 81 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 DDR2Q16832 855 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 SLC44A4Q53GD3 710 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 GPR141Q7Z602 305 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 LRRTM3Q86VH5 581 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 PDZD8Q8NEN9 1154 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 MAGEE2Q8TD90 523 aaPredicted RBP12.66□□□□□ -0.38
LIG1-201ENST00000263274 PSMG2Q969U7 264 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 HSPBAP1Q96EW2 488 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 RRN3Q9NYV6 651 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 A0A1W2PQH9 124 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 HTRA2O43464 458 aaPredicted RBP12.66□□□□□ -0.38
LIG1-201ENST00000263274 ATP6V1B2P21281 511 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 STT3AP46977 705 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 SLC5A3P53794 718 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 FOXA1P55317 472 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 TPD52P55327 224 aaPredicted RBP12.66□□□□□ -0.38
LIG1-201ENST00000263274 NFYCQ13952 458 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 LRP8Q14114 963 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 GNASQ5JWF2 1037 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 RMDN1Q96DB5 314 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 HMCESQ96FZ2 354 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 PPP1R10Q96QC0 940 aaKnown RBP12.66□□□□□ -0.38
LIG1-201ENST00000263274 ZNF696Q9H7X3 374 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 TBC1D13Q9NVG8 400 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 LAMA2P24043 3122 aaKnown RBP12.66□□□□□ -0.38
LIG1-201ENST00000263274 LTBP3Q9NS15 1303 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 DHRS12A0PJE2 317 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 UBFD1O14562 309 aaKnown RBP12.66□□□□□ -0.38
LIG1-201ENST00000263274 IRAK2O43187 625 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 CNTN5O94779 1100 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 F2P00734 622 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 HAPLN1P10915 354 aaPredicted RBP12.66□□□□□ -0.38
LIG1-201ENST00000263274 PSMA4P25789 261 aaKnown RBP12.66□□□□□ -0.38
LIG1-201ENST00000263274 SLC7A1P30825 629 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 HK2P52789 917 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 DCTN2Q13561 401 aaKnown RBP12.66□□□□□ -0.38
LIG1-201ENST00000263274 INPP5AQ14642 412 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 KIAA0930Q6ICG6 404 aaPredicted RBP12.66□□□□□ -0.38
LIG1-201ENST00000263274 CXCL17Q6UXB2 119 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 TMEM86AQ8N2M4 240 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 OR2T34Q8NGX1 318 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 OR2T3Q8NH03 318 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 THAP11Q96EK4 314 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 EXOC2Q96KP1 924 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 CYP2S1Q96SQ9 504 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 PRG3Q9Y2Y8 225 aaPredicted RBP12.66□□□□□ -0.38
LIG1-201ENST00000263274 ARL5AQ9Y689 179 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 CLOCKO15516 846 aa12.65□□□□□ -0.38
LIG1-201ENST00000263274 RHOBTB1O94844 696 aa12.65□□□□□ -0.38
LIG1-201ENST00000263274 PCNAP12004 261 aa12.65□□□□□ -0.38
LIG1-201ENST00000263274 ZNF23P17027 643 aa12.65□□□□□ -0.38
LIG1-201ENST00000263274 CDH2P19022 906 aaPredicted RBP12.65□□□□□ -0.38
LIG1-201ENST00000263274 DNAJB2P25686 324 aa12.65□□□□□ -0.38
LIG1-201ENST00000263274 FMO4P31512 558 aa12.65□□□□□ -0.38
LIG1-201ENST00000263274 CLCN5P51795 746 aa12.65□□□□□ -0.38
LIG1-201ENST00000263274 PSMD5Q16401 504 aa12.65□□□□□ -0.38
LIG1-201ENST00000263274 PM20D1Q6GTS8 502 aa12.65□□□□□ -0.38
LIG1-201ENST00000263274 TIGD7Q6NT04 549 aaPredicted RBP12.65□□□□□ -0.38
LIG1-201ENST00000263274 RETREG3Q86VR2 466 aa12.65□□□□□ -0.38
LIG1-201ENST00000263274 SLC22A9Q8IVM8 553 aa12.65□□□□□ -0.38
LIG1-201ENST00000263274 THEM5Q8N1Q8 247 aa12.65□□□□□ -0.38
LIG1-201ENST00000263274 OR13C4Q8NGS5 318 aa12.65□□□□□ -0.38
LIG1-201ENST00000263274 HMGCLL1Q8TB92 370 aa12.65□□□□□ -0.38
LIG1-201ENST00000263274 RPRD1AQ96P16 312 aaPredicted RBP12.65□□□□□ -0.38
LIG1-201ENST00000263274 PRKD2Q9BZL6 878 aa12.65□□□□□ -0.38
LIG1-201ENST00000263274 AGO3Q9H9G7 860 aaKnown RBP12.65□□□□□ -0.38
LIG1-201ENST00000263274 PNPLA3Q9NST1 481 aa12.65□□□□□ -0.38
LIG1-201ENST00000263274 SUCOQ9UBS9 1254 aaKnown RBP12.65□□□□□ -0.38
LIG1-201ENST00000263274 PTCH2Q9Y6C5 1203 aa12.65□□□□□ -0.38
LIG1-201ENST00000263274 GLTPD2A6NH11 291 aa12.65□□□□□ -0.38
LIG1-201ENST00000263274 GLP2RO95838 553 aa12.65□□□□□ -0.38
LIG1-201ENST00000263274 CDK4P11802 303 aa12.65□□□□□ -0.38
LIG1-201ENST00000263274 FASP25445 335 aa12.65□□□□□ -0.38
LIG1-201ENST00000263274 RENBPP51606 427 aa12.65□□□□□ -0.38
LIG1-201ENST00000263274 SH3BP2P78314 561 aa12.65□□□□□ -0.38
LIG1-201ENST00000263274 SLC39A12Q504Y0 691 aa12.65□□□□□ -0.38
LIG1-201ENST00000263274 RAP1GAP2Q684P5 730 aa12.65□□□□□ -0.38
LIG1-201ENST00000263274 CLYBLQ8N0X4 340 aa12.65□□□□□ -0.38
LIG1-201ENST00000263274 MIER2Q8N344 545 aa12.65□□□□□ -0.38
LIG1-201ENST00000263274 TWIST2Q8WVJ9 160 aa12.65□□□□□ -0.38
LIG1-201ENST00000263274 TCF12Q99081 682 aa12.65□□□□□ -0.38
LIG1-201ENST00000263274 SEMA3CQ99985 751 aa12.65□□□□□ -0.38
LIG1-201ENST00000263274 KATNBL1Q9H079 304 aa12.65□□□□□ -0.38
LIG1-201ENST00000263274 A0A0J9YVX5 310 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 GOLGA8CPA6NN73 597 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 SLC22A2O15244 555 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 ALDOCP09972 364 aaKnown RBP12.64□□□□□ -0.39
LIG1-201ENST00000263274 SLC2A3P11169 496 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 APLP1P51693 650 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 DIO3P55073 304 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 HPCAP84074 193 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 RBBP7Q16576 425 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms