RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 GPAT3Q53EU6 434 aa19.16■□□□□ 0.66
UPF1-201ENST00000262803 KBTBD8Q8NFY9 601 aa19.16■□□□□ 0.66
UPF1-201ENST00000262803 PPP1R13LQ8WUF5 828 aa19.16■□□□□ 0.66
UPF1-201ENST00000262803 AIF1LQ9BQI0 150 aa19.16■□□□□ 0.66
UPF1-201ENST00000262803 SMURF2Q9HAU4 748 aa19.16■□□□□ 0.66
UPF1-201ENST00000262803 MRPL39Q9NYK5 338 aaKnown RBP19.16■□□□□ 0.66
UPF1-201ENST00000262803 A8MX80 341 aa19.16■□□□□ 0.66
UPF1-201ENST00000262803 PER2O15055 1255 aa19.16■□□□□ 0.66
UPF1-201ENST00000262803 B4GALT4O60513 344 aa19.16■□□□□ 0.66
UPF1-201ENST00000262803 MAPK10P53779 464 aa19.16■□□□□ 0.66
UPF1-201ENST00000262803 ALYREFQ86V81 257 aaKnown RBP19.16■□□□□ 0.66
UPF1-201ENST00000262803 PEX5LQ8IYB4 626 aa19.16■□□□□ 0.66
UPF1-201ENST00000262803 GJD3Q8N144 294 aa19.16■□□□□ 0.66
UPF1-201ENST00000262803 SNX15Q9NRS6 342 aa19.16■□□□□ 0.66
UPF1-201ENST00000262803 CCNYL3P0C7X3 344 aa19.16■□□□□ 0.66
UPF1-201ENST00000262803 ATP12AP54707 1039 aa19.16■□□□□ 0.66
UPF1-201ENST00000262803 PTPN20Q4JDL3 420 aa19.16■□□□□ 0.66
UPF1-201ENST00000262803 PPP1R26Q5T8A7 1209 aaPredicted RBP19.16■□□□□ 0.66
UPF1-201ENST00000262803 SPATA19Q7Z5L4 167 aa19.16■□□□□ 0.66
UPF1-201ENST00000262803 FBXO30Q8TB52 745 aa19.16■□□□□ 0.66
UPF1-201ENST00000262803 C1orf50Q9BV19 199 aa19.16■□□□□ 0.66
UPF1-201ENST00000262803 TMEM88BA6NKF7 163 aa19.15■□□□□ 0.66
UPF1-201ENST00000262803 ASNA1O43681 348 aa19.15■□□□□ 0.66
UPF1-201ENST00000262803 SH3BGRLO75368 114 aa19.15■□□□□ 0.66
UPF1-201ENST00000262803 PRG2P13727 222 aa19.15■□□□□ 0.66
UPF1-201ENST00000262803 MAPKAPK2P49137 400 aa19.15■□□□□ 0.66
UPF1-201ENST00000262803 RPTNQ6XPR3 784 aa19.15■□□□□ 0.66
UPF1-201ENST00000262803 PCDH18Q9HCL0 1135 aa19.15■□□□□ 0.66
UPF1-201ENST00000262803 EPHA3P29320 983 aa19.15■□□□□ 0.66
UPF1-201ENST00000262803 SLC24A5Q71RS6 500 aa19.15■□□□□ 0.66
UPF1-201ENST00000262803 TMC8Q8IU68 726 aa19.15■□□□□ 0.66
UPF1-201ENST00000262803 MAGEE2Q8TD90 523 aaPredicted RBP19.15■□□□□ 0.66
UPF1-201ENST00000262803 C6orf62Q9GZU0 229 aaPredicted RBP19.15■□□□□ 0.66
UPF1-201ENST00000262803 MUC13Q9H3R2 512 aa19.15■□□□□ 0.66
UPF1-201ENST00000262803 NECTIN3Q9NQS3 549 aa19.15■□□□□ 0.66
UPF1-201ENST00000262803 XPR1Q9UBH6 696 aa19.15■□□□□ 0.66
UPF1-201ENST00000262803 COLEC10Q9Y6Z7 277 aa19.15■□□□□ 0.66
UPF1-201ENST00000262803 MYOM1P52179 1685 aa19.15■□□□□ 0.66
UPF1-201ENST00000262803 FGBP02675 491 aa19.15■□□□□ 0.66
UPF1-201ENST00000262803 C9orf57Q5W0N0 161 aa19.15■□□□□ 0.66
UPF1-201ENST00000262803 ERICH5Q6P6B1 374 aa19.15■□□□□ 0.66
UPF1-201ENST00000262803 C17orf64Q86WR6 236 aa19.15■□□□□ 0.66
UPF1-201ENST00000262803 CNPPD1Q9BV87 410 aa19.15■□□□□ 0.66
UPF1-201ENST00000262803 MBD2Q9UBB5 411 aa19.15■□□□□ 0.66
UPF1-201ENST00000262803 GSAPA4D1B5 854 aa19.15■□□□□ 0.66
UPF1-201ENST00000262803 LYPLA1O75608 230 aaPredicted RBP19.15■□□□□ 0.66
UPF1-201ENST00000262803 PTPN9P43378 593 aa19.15■□□□□ 0.66
UPF1-201ENST00000262803 TAPT1Q6NXT6 567 aa19.15■□□□□ 0.66
UPF1-201ENST00000262803 AP3S1Q92572 193 aa19.15■□□□□ 0.66
UPF1-201ENST00000262803 EPORP19235 508 aa19.15■□□□□ 0.66
UPF1-201ENST00000262803 ASMTP46597 345 aa19.15■□□□□ 0.66
UPF1-201ENST00000262803 SLC25A24Q6NUK1 477 aa19.15■□□□□ 0.66
UPF1-201ENST00000262803 HEATR4Q86WZ0 1026 aa19.15■□□□□ 0.66
UPF1-201ENST00000262803 HIPK3Q9H422 1215 aa19.15■□□□□ 0.66
UPF1-201ENST00000262803 ZFYVE1Q9HBF4 777 aa19.15■□□□□ 0.66
UPF1-201ENST00000262803 DEC1Q9P2X7 70 aa19.15■□□□□ 0.66
UPF1-201ENST00000262803 MTRRQ9UBK8 725 aa19.15■□□□□ 0.66
UPF1-201ENST00000262803 SALL4Q9UJQ4 1053 aa19.15■□□□□ 0.66
UPF1-201ENST00000262803 FBXO5Q9UKT4 447 aa19.15■□□□□ 0.66
UPF1-201ENST00000262803 CDH5P33151 784 aaPredicted RBP19.14■□□□□ 0.66
UPF1-201ENST00000262803 DGKZQ13574 1117 aa19.14■□□□□ 0.66
UPF1-201ENST00000262803 MARK2Q7KZI7 788 aaKnown RBP19.14■□□□□ 0.66
UPF1-201ENST00000262803 C10orf107Q8IVU9 208 aa19.14■□□□□ 0.66
UPF1-201ENST00000262803 OFCC1Q8IZS5 231 aa19.14■□□□□ 0.66
UPF1-201ENST00000262803 FNDC11Q9BVV2 318 aa19.14■□□□□ 0.66
UPF1-201ENST00000262803 SH3GLB1Q9Y371 365 aa19.14■□□□□ 0.66
UPF1-201ENST00000262803 CAPN15O75808 1086 aa19.14■□□□□ 0.65
UPF1-201ENST00000262803 PGK1P00558 417 aa19.14■□□□□ 0.65
UPF1-201ENST00000262803 SLC20A2Q08357 652 aa19.14■□□□□ 0.65
UPF1-201ENST00000262803 CTBP1Q13363 440 aa19.14■□□□□ 0.65
UPF1-201ENST00000262803 MFSD5Q6N075 450 aa19.14■□□□□ 0.65
UPF1-201ENST00000262803 TAF5Q15542 800 aa19.14■□□□□ 0.65
UPF1-201ENST00000262803 CXXC5Q7LFL8 322 aaKnown RBP19.14■□□□□ 0.65
UPF1-201ENST00000262803 CROCCP3Q8IVE0 287 aa19.14■□□□□ 0.65
UPF1-201ENST00000262803 TEX47Q8TBZ9 253 aa19.14■□□□□ 0.65
UPF1-201ENST00000262803 FNIP1Q8TF40 1166 aa19.14■□□□□ 0.65
UPF1-201ENST00000262803 PHF10Q8WUB8 498 aaKnown RBP19.14■□□□□ 0.65
UPF1-201ENST00000262803 COG5Q9UP83 839 aa19.14■□□□□ 0.65
UPF1-201ENST00000262803 AZIN1O14977 448 aa19.14■□□□□ 0.65
UPF1-201ENST00000262803 ATG13O75143 517 aa19.14■□□□□ 0.65
UPF1-201ENST00000262803 SLC25A14O95258 325 aaPredicted RBP19.14■□□□□ 0.65
UPF1-201ENST00000262803 CXCR3P49682 368 aa19.14■□□□□ 0.65
UPF1-201ENST00000262803 PDK3Q15120 406 aa19.14■□□□□ 0.65
UPF1-201ENST00000262803 KLHL24Q6TFL4 600 aa19.14■□□□□ 0.65
UPF1-201ENST00000262803 RAVER1Q8IY67 606 aaKnown RBP19.14■□□□□ 0.65
UPF1-201ENST00000262803 MTFMTQ96DP5 389 aaKnown RBP19.14■□□□□ 0.65
UPF1-201ENST00000262803 RIPOR3Q96MK2 946 aa19.14■□□□□ 0.65
UPF1-201ENST00000262803 PRPF19Q9UMS4 504 aaKnown RBP19.14■□□□□ 0.65
UPF1-201ENST00000262803 TCRBV7S2A1N4TA0A589 114 aa19.13■□□□□ 0.65
UPF1-201ENST00000262803 UBE2QL1A1L167 161 aa19.13■□□□□ 0.65
UPF1-201ENST00000262803 TSPAN8P19075 237 aa19.13■□□□□ 0.65
UPF1-201ENST00000262803 IDSP22304 550 aa19.13■□□□□ 0.65
UPF1-201ENST00000262803 GABRR2P28476 465 aa19.13■□□□□ 0.65
UPF1-201ENST00000262803 RPL4P36578 427 aaKnown RBP19.13■□□□□ 0.65
UPF1-201ENST00000262803 TRIM25Q14258 630 aaKnown RBP19.13■□□□□ 0.65
UPF1-201ENST00000262803 NOMO1Q15155 1222 aa19.13■□□□□ 0.65
UPF1-201ENST00000262803 MAPK11Q15759 364 aa19.13■□□□□ 0.65
UPF1-201ENST00000262803 ATAT1Q5SQI0 421 aa19.13■□□□□ 0.65
UPF1-201ENST00000262803 DNAJB14Q8TBM8 379 aa19.13■□□□□ 0.65
UPF1-201ENST00000262803 RCN3Q96D15 328 aa19.13■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms