RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 TMEM120AQ9BXJ8 343 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 SLC46A2Q9BY10 475 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 FAM83DQ9H4H8 585 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 POMKQ9H5K3 350 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 NSUN3Q9H649 340 aaKnown RBP11.6□□□□□ -0.55
VPS4A-201ENST00000254950 EPS15L1Q9UBC2 864 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 ARL5AQ9Y689 179 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 CXorf49A8MYA2 514 aaPredicted RBP11.6□□□□□ -0.55
VPS4A-201ENST00000254950 NVLO15381 856 aaKnown RBP11.6□□□□□ -0.55
VPS4A-201ENST00000254950 MYLK3Q32MK0 819 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 SPDYAQ5MJ70 313 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 OR52K2Q8NGK3 314 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 OR13C4Q8NGS5 318 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 DCAKDQ8WVC6 231 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 SLC2A11Q9BYW1 496 aa11.6□□□□□ -0.55
VPS4A-201ENST00000254950 UGT1A9O60656 530 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 F11P03951 625 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 DNTTP04053 509 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 CREB1P16220 341 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 HMGA1P17096 107 aaKnown RBP11.59□□□□□ -0.55
VPS4A-201ENST00000254950 SLC8A1P32418 973 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 RPL26P61254 145 aaKnown RBP11.59□□□□□ -0.55
VPS4A-201ENST00000254950 SEMA3BQ13214 749 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 MSLNQ13421 630 aaPredicted RBP11.59□□□□□ -0.55
VPS4A-201ENST00000254950 GDPD4Q6W3E5 623 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 PIWIL4Q7Z3Z4 852 aaKnown RBP11.59□□□□□ -0.55
VPS4A-201ENST00000254950 TRMT11Q7Z4G4 463 aaKnown RBP11.59□□□□□ -0.55
VPS4A-201ENST00000254950 CYB5D2Q8WUJ1 264 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 HEXDCQ8WVB3 486 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 CDKN2AIPNLQ96HQ2 116 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 LRGUKQ96M69 825 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 CENPKQ9BS16 269 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 OSGEPL1Q9H4B0 414 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 UGT1A7Q9HAW7 530 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 UGT1A10Q9HAW8 530 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 UGT1A8Q9HAW9 530 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 POLR3BQ9NW08 1133 aaPredicted RBP11.59□□□□□ -0.55
VPS4A-201ENST00000254950 NDE1Q9NXR1 346 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 RPL26L1Q9UNX3 145 aaKnown RBP11.59□□□□□ -0.55
VPS4A-201ENST00000254950 CLASP2O75122 1294 aaKnown RBP11.59□□□□□ -0.55
VPS4A-201ENST00000254950 GUCA1CO95843 209 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 DLDP09622 509 aaKnown RBP11.59□□□□□ -0.55
VPS4A-201ENST00000254950 SLC1A2P43004 574 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 MTSS1LQ765P7 747 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 ADAMTSL2Q86TH1 951 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 SHKBP1Q8TBC3 707 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 CMTM5Q96DZ9 223 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 MRGPRX2Q96LB1 330 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 PKMYT1Q99640 499 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 MFSD1Q9H3U5 465 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 ZNF236Q9UL36 1845 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 IFRD1O00458 451 aaPredicted RBP11.59□□□□□ -0.55
VPS4A-201ENST00000254950 MAGEC1O60732 1142 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 SLC25A14O95258 325 aaPredicted RBP11.59□□□□□ -0.55
VPS4A-201ENST00000254950 PIGNO95427 931 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 OAS1P00973 400 aaKnown RBP11.59□□□□□ -0.55
VPS4A-201ENST00000254950 CATP04040 527 aaKnown RBP11.59□□□□□ -0.55
VPS4A-201ENST00000254950 BPGMP07738 259 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 SLC6A4P31645 630 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 PSMD8P48556 350 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 ERVK-21P61565 698 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 CRY1Q16526 586 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 SGO1Q5FBB7 561 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 HTR3DQ70Z44 454 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 FIBINQ8TAL6 211 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 SNX19Q92543 992 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 ELMO1Q92556 727 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 TUBGCP3Q96CW5 907 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 ASB2Q96Q27 587 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 LNPEPQ9UIQ6 1025 aa11.59□□□□□ -0.55
VPS4A-201ENST00000254950 HEPACAM2A8MVW5 462 aa11.58□□□□□ -0.55
VPS4A-201ENST00000254950 SNX3O60493 162 aa11.58□□□□□ -0.55
VPS4A-201ENST00000254950 PAPSS2O95340 614 aaPredicted RBP11.58□□□□□ -0.55
VPS4A-201ENST00000254950 BAG2O95816 211 aa11.58□□□□□ -0.55
VPS4A-201ENST00000254950 IGHA2P01877 340 aa11.58□□□□□ -0.55
VPS4A-201ENST00000254950 FTH1P02794 183 aa11.58□□□□□ -0.55
VPS4A-201ENST00000254950 TAS2R39P59534 338 aa11.58□□□□□ -0.55
VPS4A-201ENST00000254950 CUL3Q13618 768 aa11.58□□□□□ -0.55
VPS4A-201ENST00000254950 PPM1JQ5JR12 505 aa11.58□□□□□ -0.55
VPS4A-201ENST00000254950 BRAT1Q6PJG6 821 aa11.58□□□□□ -0.55
VPS4A-201ENST00000254950 DOK6Q6PKX4 331 aa11.58□□□□□ -0.55
VPS4A-201ENST00000254950 ADCK2Q7Z695 626 aa11.58□□□□□ -0.55
VPS4A-201ENST00000254950 TMEM25Q86YD3 366 aa11.58□□□□□ -0.55
VPS4A-201ENST00000254950 TBC1D19Q8N5T2 526 aa11.58□□□□□ -0.55
VPS4A-201ENST00000254950 SERAC1Q96JX3 654 aa11.58□□□□□ -0.55
VPS4A-201ENST00000254950 VTI1BQ9UEU0 232 aa11.58□□□□□ -0.55
VPS4A-201ENST00000254950 DOLKQ9UPQ8 538 aa11.58□□□□□ -0.55
VPS4A-201ENST00000254950 MYO18AQ92614 2054 aaKnown RBP11.58□□□□□ -0.56
VPS4A-201ENST00000254950 ARID2Q68CP9 1835 aa11.58□□□□□ -0.56
VPS4A-201ENST00000254950 ZBTB14O43829 449 aa11.58□□□□□ -0.56
VPS4A-201ENST00000254950 ABCE1P61221 599 aaKnown RBP11.58□□□□□ -0.56
VPS4A-201ENST00000254950 RBBP5Q15291 538 aaKnown RBP11.58□□□□□ -0.56
VPS4A-201ENST00000254950 SHHQ15465 462 aa11.58□□□□□ -0.56
VPS4A-201ENST00000254950 PFKFB4Q16877 469 aa11.58□□□□□ -0.56
VPS4A-201ENST00000254950 DET1Q7L5Y6 550 aa11.58□□□□□ -0.56
VPS4A-201ENST00000254950 CPXM2Q8N436 756 aa11.58□□□□□ -0.56
VPS4A-201ENST00000254950 PTGR2Q8N8N7 351 aaPredicted RBP11.58□□□□□ -0.56
VPS4A-201ENST00000254950 PIWIL2Q8TC59 973 aaKnown RBP11.58□□□□□ -0.56
VPS4A-201ENST00000254950 TCEAL4Q96EI5 215 aa11.58□□□□□ -0.56
VPS4A-201ENST00000254950 SIKE1Q9BRV8 207 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms