RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 TTC39CQ8N584 583 aa10.71□□□□□ -0.69
USP28-201ENST00000003302 TRPC4APQ8TEL6 797 aa10.71□□□□□ -0.69
USP28-201ENST00000003302 A0A0D9SEW6 157 aa10.71□□□□□ -0.69
USP28-201ENST00000003302 A0A0J9YVX5 310 aa10.71□□□□□ -0.69
USP28-201ENST00000003302 ERI2A8K979 691 aaKnown RBP10.71□□□□□ -0.69
USP28-201ENST00000003302 E9PAM4 449 aa10.71□□□□□ -0.69
USP28-201ENST00000003302 FAM58BPP0C7Q3 252 aa10.71□□□□□ -0.69
USP28-201ENST00000003302 GPX3P22352 226 aa10.71□□□□□ -0.69
USP28-201ENST00000003302 HMGB2P26583 209 aaKnown RBP10.71□□□□□ -0.69
USP28-201ENST00000003302 PFKPQ01813 784 aa10.71□□□□□ -0.69
USP28-201ENST00000003302 RHDQ02161 417 aa10.71□□□□□ -0.69
USP28-201ENST00000003302 MYBPC3Q14896 1274 aa10.71□□□□□ -0.69
USP28-201ENST00000003302 PHYKPLQ8IUZ5 450 aa10.71□□□□□ -0.69
USP28-201ENST00000003302 SCN4BQ8IWT1 228 aa10.71□□□□□ -0.69
USP28-201ENST00000003302 OR10Q1Q8NGQ4 319 aa10.71□□□□□ -0.69
USP28-201ENST00000003302 ZNF597Q96LX8 424 aa10.71□□□□□ -0.69
USP28-201ENST00000003302 PKMYT1Q99640 499 aa10.71□□□□□ -0.69
USP28-201ENST00000003302 SEMA4BQ9NPR2 832 aaPredicted RBP10.71□□□□□ -0.69
USP28-201ENST00000003302 INTS7Q9NVH2 962 aaKnown RBP10.71□□□□□ -0.69
USP28-201ENST00000003302 ARHGEF38Q9NXL2 777 aa10.71□□□□□ -0.69
USP28-201ENST00000003302 UXTQ9UBK9 157 aaPredicted RBP10.71□□□□□ -0.69
USP28-201ENST00000003302 OAZ3Q9UMX2 235 aa10.71□□□□□ -0.69
USP28-201ENST00000003302 ZFP36L2P47974 494 aaKnown RBP10.71□□□□□ -0.7
USP28-201ENST00000003302 ENTPD1P49961 510 aa10.71□□□□□ -0.7
USP28-201ENST00000003302 PRKAA2P54646 552 aa10.71□□□□□ -0.7
USP28-201ENST00000003302 NAB1Q13506 487 aa10.71□□□□□ -0.7
USP28-201ENST00000003302 FASTKD5Q7L8L6 764 aaKnown RBP10.71□□□□□ -0.7
USP28-201ENST00000003302 LSRQ86X29 649 aaPredicted RBP10.71□□□□□ -0.7
USP28-201ENST00000003302 FAM86B1Q8N7N1 296 aa10.71□□□□□ -0.7
USP28-201ENST00000003302 FCRL5Q96RD9 977 aa10.71□□□□□ -0.7
USP28-201ENST00000003302 RANBP9Q96S59 729 aa10.71□□□□□ -0.7
USP28-201ENST00000003302 FAM96AQ9H5X1 160 aa10.71□□□□□ -0.7
USP28-201ENST00000003302 VPS45Q9NRW7 570 aa10.71□□□□□ -0.7
USP28-201ENST00000003302 AASSQ9UDR5 926 aa10.71□□□□□ -0.7
USP28-201ENST00000003302 ARHGEF37A1IGU5 675 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 AKAP10O43572 662 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 LDB2O43679 373 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 S1PR4O95977 384 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 THP07101 528 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 HSPA1AP0DMV8 641 aaKnown RBP10.7□□□□□ -0.7
USP28-201ENST00000003302 HSPA1BP0DMV9 641 aaKnown RBP10.7□□□□□ -0.7
USP28-201ENST00000003302 TCF3P15923 654 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 PIGFQ07326 219 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 SIRPB2Q5JXA9 342 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 C8orf82Q6P1X6 216 aaPredicted RBP10.7□□□□□ -0.7
USP28-201ENST00000003302 DCLRE1AQ6PJP8 1040 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 SLC15A3Q8IY34 581 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 TRPV1Q8NER1 839 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 PGAP3Q96FM1 320 aaPredicted RBP10.7□□□□□ -0.7
USP28-201ENST00000003302 SLC9A7Q96T83 725 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 UTP6Q9NYH9 597 aaKnown RBP10.7□□□□□ -0.7
USP28-201ENST00000003302 KRT87PA6NCN2 255 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 TRIM38O00635 465 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 TNFRSF10BO14763 440 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 OR1I1O60431 355 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 ATE1O95260 518 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 PLOD1Q02809 727 aaPredicted RBP10.7□□□□□ -0.7
USP28-201ENST00000003302 CD300CQ08708 224 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 SELPLGQ14242 412 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 ZNF678Q5SXM1 525 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 TSPAN14Q8NG11 270 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 OR2T11Q8NH01 316 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 BLOC1S5Q8TDH9 187 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 ZNF696Q9H7X3 374 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 MEAF6Q9HAF1 191 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 CSNK1G1Q9HCP0 422 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 ABI2Q9NYB9 513 aaPredicted RBP10.7□□□□□ -0.7
USP28-201ENST00000003302 TMEM181Q9P2C4 612 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 A0A0J9YYE9 177 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 PCNAP12004 261 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 ATP5F1P24539 256 aaPredicted RBP10.7□□□□□ -0.7
USP28-201ENST00000003302 IL12AP29459 219 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 CASP2P42575 452 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 PSMD7P51665 324 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 ZNF598Q86UK7 904 aaKnown RBP10.7□□□□□ -0.7
USP28-201ENST00000003302 ZNF354CQ86Y25 554 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 TANKQ92844 425 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 ITCHQ96J02 903 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 CARS2Q9HA77 564 aaKnown RBP10.7□□□□□ -0.7
USP28-201ENST00000003302 SLC52A3Q9NQ40 469 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 PIKFYVEQ9Y2I7 2098 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 TCRBV3S1A0A5B6 114 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 CDC7O00311 574 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 MATN3O15232 486 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 NRP2O60462 931 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 WISP3O95389 354 aaPredicted RBP10.7□□□□□ -0.7
USP28-201ENST00000003302 HPCAP84074 193 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 SLC44A4Q53GD3 710 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 ATAD1Q8NBU5 361 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 MRPL57Q9BQC6 102 aaKnown RBP10.7□□□□□ -0.7
USP28-201ENST00000003302 TRHDEQ9UKU6 1024 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 PHF24Q9UPV7 400 aa10.7□□□□□ -0.7
USP28-201ENST00000003302 PRAMEF12O95522 483 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 C8BP07358 591 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 ATXN1LP0C7T5 689 aaKnown RBP10.69□□□□□ -0.7
USP28-201ENST00000003302 SLC6A2P23975 617 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 MLLT10P55197 1068 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 KYAT1Q16773 422 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 XKR5Q6UX68 686 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 KIAA2013Q8IYS2 634 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms