RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 MAN2B2Q9Y2E5 1009 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 SLITRK5O94991 958 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 TGFAP01135 160 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 FGRP09769 529 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 S100PP25815 95 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 BDKRB2P30411 391 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 SERPINF1P36955 418 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 ALDH1A3P47895 512 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 INPP1P49441 399 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 TEAD4Q15561 434 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 HKDC1Q2TB90 917 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 ZACNQ401N2 412 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 LCN1P1Q5VSP4 162 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 HEPHL1Q6MZM0 1159 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 EMBQ6PCB8 327 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 TRAPPC11Q7Z392 1133 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 SIMC1Q8NDZ2 872 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 UBASH3BQ8TF42 649 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 PHF21BQ96EK2 531 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 CYP26B1Q9NR63 512 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 A8MU76 341 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 TCP11X1B4DZS4 312 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 ZBTB5O15062 677 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 PLA2G6O60733 806 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 APOC1P02654 83 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 GSNP06396 782 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 PON3Q15166 354 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 TBCEQ15813 527 aaPredicted RBP3.58□□□□□ -1.84
SCN1A-221ENST00000641996 CDONQ4KMG0 1287 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 LRRC73Q5JTD7 316 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 THEM4Q5T1C6 240 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 CCNYL2Q5T2Q4 361 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 FAM171A1Q5VUB5 890 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 ETV3LQ6ZN32 361 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 TSTD1Q8NFU3 115 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 MYDGFQ969H8 173 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 NTMT1Q9BV86 223 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 OR51B6Q9H340 312 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 MLXIPLQ9NP71 852 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 NIT2Q9NQR4 276 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 OR6C2Q9NZP2 312 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 PCDHA10Q9Y5I2 948 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 MCM3APO60318 1980 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 ARGFXA6NJG6 315 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 FADS2P1A8MWK0 482 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 TFECO14948 347 aaPredicted RBP3.58□□□□□ -1.84
SCN1A-221ENST00000641996 TO15178 435 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 CTRB1P17538 263 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 PTX3P26022 381 aaPredicted RBP3.58□□□□□ -1.84
SCN1A-221ENST00000641996 SLC6A6P31641 620 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 CDKL1Q00532 357 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF460Q14592 562 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 C9orf152Q5JTZ5 239 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 FAM69BQ5VUD6 431 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 STEAP3Q658P3 488 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 CTRB2Q6GPI1 263 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 WDR88Q6ZMY6 472 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 HTR3DQ70Z44 454 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 TECPR1Q7Z6L1 1165 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 COL23A1Q86Y22 540 aaPredicted RBP3.58□□□□□ -1.84
SCN1A-221ENST00000641996 Q8N9G6 341 aaPredicted RBP3.58□□□□□ -1.84
SCN1A-221ENST00000641996 OR4A15Q8NGL6 344 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 MAP6Q96JE9 813 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 LRRC40Q9H9A6 602 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 SIAEQ9HAT2 523 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 SMURF2Q9HAU4 748 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 PDP1Q9P0J1 537 aaPredicted RBP3.58□□□□□ -1.84
SCN1A-221ENST00000641996 RAB23Q9ULC3 237 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 TLR6Q9Y2C9 796 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 CENPXA8MT69 81 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 F5H0A9 414 aaPredicted RBP3.58□□□□□ -1.84
SCN1A-221ENST00000641996 H7C2Y5 167 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 SOCS6O14544 535 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 TLX3O43711 291 aaPredicted RBP3.58□□□□□ -1.84
SCN1A-221ENST00000641996 OLFM2O95897 454 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 CYP11A1P05108 521 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 JMJD7P0C870 316 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 CD46P15529 392 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 HK1P19367 917 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 CYP2B6P20813 491 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 DGCR6Q14129 220 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 GRB14Q14449 540 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 ZNHIT3Q15649 155 aaPredicted RBP3.58□□□□□ -1.84
SCN1A-221ENST00000641996 PRAMEF14Q5SWL7 426 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 HAUS6Q7Z4H7 955 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 DNAJA4Q8WW22 397 aaPredicted RBP3.58□□□□□ -1.84
SCN1A-221ENST00000641996 PLEKHA8Q96JA3 519 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF514Q96K75 400 aaPredicted RBP3.58□□□□□ -1.84
SCN1A-221ENST00000641996 FCRL4Q96PJ5 515 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 DHRS9Q9BPW9 319 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 CATSPERZQ9NTU4 200 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 TBC1D13Q9NVG8 400 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 MCUBQ9NWR8 336 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 FARSAQ9Y285 508 aaKnown RBP3.58□□□□□ -1.84
SCN1A-221ENST00000641996 EXPH5Q8NEV8 1989 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 FAM172BPA6NC97 362 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 TUBBP07437 444 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 PEPDP12955 493 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 MAGEA3P43357 314 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 COMPP49747 757 aaPredicted RBP3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms