RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 AFF1P51825 1210 aaKnown RBP20.17■□□□□ 0.82
SYNGAP1-227ENST00000638142 TIGD5Q53EQ6 642 aa20.17■□□□□ 0.82
SYNGAP1-227ENST00000638142 NHSL2Q5HYW2 709 aa20.17■□□□□ 0.82
SYNGAP1-227ENST00000638142 ERMP1Q7Z2K6 904 aa20.17■□□□□ 0.82
SYNGAP1-227ENST00000638142 FUNDC1Q8IVP5 155 aa20.17■□□□□ 0.82
SYNGAP1-227ENST00000638142 PACRGLQ8N7B6 248 aa20.17■□□□□ 0.82
SYNGAP1-227ENST00000638142 MIPOL1Q8TD10 442 aa20.17■□□□□ 0.82
SYNGAP1-227ENST00000638142 FNIP2Q9P278 1114 aa20.17■□□□□ 0.82
SYNGAP1-227ENST00000638142 NYNRINQ9P2P1 1898 aaKnown RBP20.17■□□□□ 0.82
SYNGAP1-227ENST00000638142 ZNF839A8K0R7 811 aa20.17■□□□□ 0.82
SYNGAP1-227ENST00000638142 GPX3P22352 226 aa20.17■□□□□ 0.82
SYNGAP1-227ENST00000638142 ADARP55265 1226 aaKnown RBP20.17■□□□□ 0.82
SYNGAP1-227ENST00000638142 NOMO2Q5JPE7 1267 aa20.17■□□□□ 0.82
SYNGAP1-227ENST00000638142 PRMT9Q6P2P2 845 aa20.17■□□□□ 0.82
SYNGAP1-227ENST00000638142 OR13J1Q8NGT2 312 aa20.17■□□□□ 0.82
SYNGAP1-227ENST00000638142 TCF12Q99081 682 aa20.17■□□□□ 0.82
SYNGAP1-227ENST00000638142 ALG9Q9H6U8 611 aa20.17■□□□□ 0.82
SYNGAP1-227ENST00000638142 CLK4Q9HAZ1 481 aaKnown RBP20.17■□□□□ 0.82
SYNGAP1-227ENST00000638142 DUS2Q9NX74 493 aaKnown RBP20.17■□□□□ 0.82
SYNGAP1-227ENST00000638142 MIOSQ9NXC5 875 aa20.17■□□□□ 0.82
SYNGAP1-227ENST00000638142 SLC8A2Q9UPR5 921 aa20.17■□□□□ 0.82
SYNGAP1-227ENST00000638142 TIPRLO75663 272 aa20.16■□□□□ 0.82
SYNGAP1-227ENST00000638142 GRIA3P42263 894 aa20.16■□□□□ 0.82
SYNGAP1-227ENST00000638142 CLYBLQ8N0X4 340 aa20.16■□□□□ 0.82
SYNGAP1-227ENST00000638142 SNX31Q8N9S9 440 aa20.16■□□□□ 0.82
SYNGAP1-227ENST00000638142 ZC3H15Q8WU90 426 aaKnown RBP20.16■□□□□ 0.82
SYNGAP1-227ENST00000638142 CANT1Q8WVQ1 401 aa20.16■□□□□ 0.82
SYNGAP1-227ENST00000638142 PPP1R14BQ96C90 147 aa20.16■□□□□ 0.82
SYNGAP1-227ENST00000638142 IMP4Q96G21 291 aaKnown RBP20.16■□□□□ 0.82
SYNGAP1-227ENST00000638142 ASB2Q96Q27 587 aa20.16■□□□□ 0.82
SYNGAP1-227ENST00000638142 HOPXQ9BPY8 73 aaPredicted RBP20.16■□□□□ 0.82
SYNGAP1-227ENST00000638142 GPATCH1Q9BRR8 931 aaKnown RBP20.16■□□□□ 0.82
SYNGAP1-227ENST00000638142 TRIM15Q9C019 465 aa20.16■□□□□ 0.82
SYNGAP1-227ENST00000638142 VPS45Q9NRW7 570 aa20.16■□□□□ 0.82
SYNGAP1-227ENST00000638142 AKAP10O43572 662 aa20.16■□□□□ 0.82
SYNGAP1-227ENST00000638142 PRKCQQ04759 706 aa20.16■□□□□ 0.82
SYNGAP1-227ENST00000638142 IRF5Q13568 498 aa20.16■□□□□ 0.82
SYNGAP1-227ENST00000638142 PRAMEF19Q5SWL8 479 aa20.16■□□□□ 0.82
SYNGAP1-227ENST00000638142 ISCA2Q86U28 154 aa20.16■□□□□ 0.82
SYNGAP1-227ENST00000638142 METTL23Q86XA0 190 aa20.16■□□□□ 0.82
SYNGAP1-227ENST00000638142 SCAMP5Q8TAC9 235 aa20.16■□□□□ 0.82
SYNGAP1-227ENST00000638142 TFAP2CQ92754 450 aa20.16■□□□□ 0.82
SYNGAP1-227ENST00000638142 ZNF512Q96ME7 567 aaPredicted RBP20.16■□□□□ 0.82
SYNGAP1-227ENST00000638142 MFSD1Q9H3U5 465 aa20.16■□□□□ 0.82
SYNGAP1-227ENST00000638142 FBRSL1Q9HCM7 1045 aaKnown RBP20.16■□□□□ 0.82
SYNGAP1-227ENST00000638142 CCM2LQ9NUG4 571 aaPredicted RBP20.16■□□□□ 0.82
SYNGAP1-227ENST00000638142 ABCD2Q9UBJ2 740 aa20.16■□□□□ 0.82
SYNGAP1-227ENST00000638142 NDUFAF1Q9Y375 327 aa20.16■□□□□ 0.82
SYNGAP1-227ENST00000638142 TANC1Q9C0D5 1861 aa20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 ATP6AP2A0A1C7CYW4 349 aa20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 CASTOR2A6NHX0 329 aa20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 AQP12BA6NM10 295 aa20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 E9PAM4 449 aa20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 TNPO2O14787 897 aaKnown RBP20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 ATP6AP2O75787 350 aa20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 BMP10O95393 424 aa20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 ALDOCP09972 364 aaKnown RBP20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 IMPDH2P12268 514 aa20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 CKMT2P17540 419 aa20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 ATP6V1B2P21281 511 aa20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 HERVK_113P63132 956 aa20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 NRG1Q02297 640 aaPredicted RBP20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 ILF2Q12905 390 aaKnown RBP20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 UPP1Q16831 310 aa20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 UGT3A2Q3SY77 523 aa20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 UNC50Q53HI1 259 aa20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 GPR158Q5T848 1215 aa20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 AQP12AQ8IXF9 295 aa20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 RBM12BQ8IXT5 1001 aaKnown RBP20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 FIBCD1Q8N539 461 aa20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 MFSD2AQ8NA29 543 aa20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 GOLM1Q8NBJ4 401 aa20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 SLC39A3Q9BRY0 314 aa20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 ERVK-6Q9BXR3 956 aa20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 A0A0J9YYE9 177 aa20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 ARL5CA6NH57 179 aa20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 WASH4PA8MWX3 477 aa20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 MT-CO1P00395 513 aa20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 MYL3P08590 195 aa20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 CPT1AP50416 773 aa20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 RENBPP51606 427 aa20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 CDKN2DP55273 166 aa20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 EML3Q32P44 896 aa20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 INTS11Q5TA45 600 aaKnown RBP20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 TMEM207Q6UWW9 146 aa20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 LPCAT2Q7L5N7 544 aa20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 RETREG3Q86VR2 466 aa20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 SPNS2Q8IVW8 549 aa20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 MS4A4AQ96JQ5 239 aa20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 C3orf30Q96M34 536 aa20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 KATNAL1Q9BW62 490 aa20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 SFMBT1Q9UHJ3 866 aa20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 BPTFQ12830 3046 aa20.15■□□□□ 0.82
SYNGAP1-227ENST00000638142 CCL15-CCL14A0A0B4J2E2 113 aa20.14■□□□□ 0.82
SYNGAP1-227ENST00000638142 SOCS2O14508 198 aa20.14■□□□□ 0.82
SYNGAP1-227ENST00000638142 MSI1O43347 362 aaKnown RBP20.14■□□□□ 0.82
SYNGAP1-227ENST00000638142 S1PR4O95977 384 aa20.14■□□□□ 0.82
SYNGAP1-227ENST00000638142 PEX11BO96011 259 aa20.14■□□□□ 0.82
SYNGAP1-227ENST00000638142 ATP6V0D1P61421 351 aa20.14■□□□□ 0.82
SYNGAP1-227ENST00000638142 CCL15Q16663 113 aa20.14■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms