RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 PRAMEF33A0A0G2JMD5 474 aa16.48■□□□□ 0.23
CLN3-255ENST00000637100 ARHGAP42A6NI28 874 aa16.48■□□□□ 0.23
CLN3-255ENST00000637100 SUV39H1O43463 412 aa16.48■□□□□ 0.23
CLN3-255ENST00000637100 PRAMEF10O60809 474 aa16.48■□□□□ 0.23
CLN3-255ENST00000637100 FUCA1P04066 466 aa16.48■□□□□ 0.23
CLN3-255ENST00000637100 PCCBP05166 539 aa16.48■□□□□ 0.23
CLN3-255ENST00000637100 SFTPCP11686 197 aa16.48■□□□□ 0.23
CLN3-255ENST00000637100 WT1P19544 449 aaPredicted RBP16.48■□□□□ 0.23
CLN3-255ENST00000637100 ITIH1P19827 911 aa16.48■□□□□ 0.23
CLN3-255ENST00000637100 POLR2LP62875 67 aaKnown RBP16.48■□□□□ 0.23
CLN3-255ENST00000637100 SPECC1LQ69YQ0 1117 aa16.48■□□□□ 0.23
CLN3-255ENST00000637100 DNAJC24Q6P3W2 148 aa16.48■□□□□ 0.23
CLN3-255ENST00000637100 ZNF574Q6ZN55 896 aaPredicted RBP16.48■□□□□ 0.23
CLN3-255ENST00000637100 CYP4V2Q6ZWL3 525 aaPredicted RBP16.48■□□□□ 0.23
CLN3-255ENST00000637100 TAF8Q7Z7C8 310 aa16.48■□□□□ 0.23
CLN3-255ENST00000637100 MCOLN2Q8IZK6 566 aa16.48■□□□□ 0.23
CLN3-255ENST00000637100 PELI3Q8N2H9 469 aa16.48■□□□□ 0.23
CLN3-255ENST00000637100 CCL4L1Q8NHW4 92 aa16.48■□□□□ 0.23
CLN3-255ENST00000637100 MCEEQ96PE7 176 aa16.48■□□□□ 0.23
CLN3-255ENST00000637100 PSKH2Q96QS6 385 aa16.48■□□□□ 0.23
CLN3-255ENST00000637100 AGPAT1Q99943 283 aa16.48■□□□□ 0.23
CLN3-255ENST00000637100 MRPL40Q9NQ50 206 aaKnown RBP16.48■□□□□ 0.23
CLN3-255ENST00000637100 KCTD5Q9NXV2 234 aa16.48■□□□□ 0.23
CLN3-255ENST00000637100 FOXJ2Q9P0K8 574 aa16.48■□□□□ 0.23
CLN3-255ENST00000637100 SEPT10Q9P0V9 454 aa16.48■□□□□ 0.23
CLN3-255ENST00000637100 IL17BQ9UHF5 180 aa16.48■□□□□ 0.23
CLN3-255ENST00000637100 PCDHGA4Q9Y5G9 962 aa16.48■□□□□ 0.23
CLN3-255ENST00000637100 PCDHGA3Q9Y5H0 932 aa16.48■□□□□ 0.23
CLN3-255ENST00000637100 PDE2AO00408 941 aaPredicted RBP16.47■□□□□ 0.23
CLN3-255ENST00000637100 HTRA2O43464 458 aaPredicted RBP16.47■□□□□ 0.23
CLN3-255ENST00000637100 CPNE6O95741 557 aa16.47■□□□□ 0.23
CLN3-255ENST00000637100 PRKCGP05129 697 aa16.47■□□□□ 0.23
CLN3-255ENST00000637100 FGF1P05230 155 aa16.47■□□□□ 0.23
CLN3-255ENST00000637100 CCNB1P14635 433 aa16.47■□□□□ 0.23
CLN3-255ENST00000637100 TEAD1P28347 426 aa16.47■□□□□ 0.23
CLN3-255ENST00000637100 HCAR3P49019 387 aa16.47■□□□□ 0.23
CLN3-255ENST00000637100 ARSDP51689 593 aa16.47■□□□□ 0.23
CLN3-255ENST00000637100 TPI1P60174 286 aa16.47■□□□□ 0.23
CLN3-255ENST00000637100 IL10RBQ08334 325 aa16.47■□□□□ 0.23
CLN3-255ENST00000637100 C16orf72Q14CZ0 275 aa16.47■□□□□ 0.23
CLN3-255ENST00000637100 CA9Q16790 459 aa16.47■□□□□ 0.23
CLN3-255ENST00000637100 TSR1Q2NL82 804 aaKnown RBP16.47■□□□□ 0.23
CLN3-255ENST00000637100 FKBP15Q5T1M5 1219 aa16.47■□□□□ 0.23
CLN3-255ENST00000637100 ACAD10Q6JQN1 1059 aa16.47■□□□□ 0.23
CLN3-255ENST00000637100 ZFAND4Q86XD8 727 aa16.47■□□□□ 0.23
CLN3-255ENST00000637100 JAMLQ86YT9 394 aa16.47■□□□□ 0.23
CLN3-255ENST00000637100 PSTKQ8IV42 348 aaKnown RBP16.47■□□□□ 0.23
CLN3-255ENST00000637100 EXTL1Q92935 676 aa16.47■□□□□ 0.23
CLN3-255ENST00000637100 USP7Q93009 1102 aa16.47■□□□□ 0.23
CLN3-255ENST00000637100 ERGIC2Q96RQ1 377 aa16.47■□□□□ 0.23
CLN3-255ENST00000637100 TEX101Q9BY14 249 aa16.47■□□□□ 0.23
CLN3-255ENST00000637100 NUP62CLQ9H1M0 184 aa16.47■□□□□ 0.23
CLN3-255ENST00000637100 SEMA6CQ9H3T2 930 aa16.47■□□□□ 0.23
CLN3-255ENST00000637100 SPATS2LQ9NUQ6 558 aaKnown RBP16.47■□□□□ 0.23
CLN3-255ENST00000637100 TRNAU1APQ9NX07 287 aaKnown RBP16.47■□□□□ 0.23
CLN3-255ENST00000637100 LIMA1Q9UHB6 759 aaKnown RBP16.47■□□□□ 0.23
CLN3-255ENST00000637100 BSNQ9UPA5 3926 aa16.47■□□□□ 0.23
CLN3-255ENST00000637100 ANKRD36A6QL64 1941 aa16.47■□□□□ 0.23
CLN3-255ENST00000637100 ARHGEF17Q96PE2 2063 aaPredicted RBP16.46■□□□□ 0.23
CLN3-255ENST00000637100 PRSS38A1L453 326 aa16.46■□□□□ 0.23
CLN3-255ENST00000637100 ANKRD62A6NC57 917 aa16.46■□□□□ 0.23
CLN3-255ENST00000637100 HGSO14964 777 aaPredicted RBP16.46■□□□□ 0.23
CLN3-255ENST00000637100 PALMO75781 387 aa16.46■□□□□ 0.23
CLN3-255ENST00000637100 CEACAM5P06731 702 aa16.46■□□□□ 0.23
CLN3-255ENST00000637100 ELFN1P0C7U0 828 aa16.46■□□□□ 0.23
CLN3-255ENST00000637100 MYCLP1P12525 358 aaPredicted RBP16.46■□□□□ 0.23
CLN3-255ENST00000637100 KRT10P13645 584 aa16.46■□□□□ 0.23
CLN3-255ENST00000637100 CR2P20023 1033 aa16.46■□□□□ 0.23
CLN3-255ENST00000637100 ZNF135P52742 658 aaPredicted RBP16.46■□□□□ 0.23
CLN3-255ENST00000637100 AP1S1P61966 158 aa16.46■□□□□ 0.23
CLN3-255ENST00000637100 BCL2L1Q07817 233 aa16.46■□□□□ 0.23
CLN3-255ENST00000637100 NFATC3Q12968 1075 aa16.46■□□□□ 0.23
CLN3-255ENST00000637100 SYCP1Q15431 976 aa16.46■□□□□ 0.23
CLN3-255ENST00000637100 TCEA2Q15560 299 aa16.46■□□□□ 0.23
CLN3-255ENST00000637100 TBR1Q16650 682 aa16.46■□□□□ 0.23
CLN3-255ENST00000637100 PLEKHA7Q6IQ23 1121 aa16.46■□□□□ 0.23
CLN3-255ENST00000637100 RBM43Q6ZSC3 357 aaKnown RBP16.46■□□□□ 0.23
CLN3-255ENST00000637100 APTXQ7Z2E3 356 aaKnown RBP16.46■□□□□ 0.23
CLN3-255ENST00000637100 Q8N9G6 341 aaPredicted RBP16.46■□□□□ 0.23
CLN3-255ENST00000637100 HTR3CQ8WXA8 447 aa16.46■□□□□ 0.23
CLN3-255ENST00000637100 SCARF2Q96GP6 870 aaPredicted RBP16.46■□□□□ 0.23
CLN3-255ENST00000637100 CELF6Q96J87 481 aaKnown RBP16.46■□□□□ 0.23
CLN3-255ENST00000637100 ZNF599Q96NL3 588 aa16.46■□□□□ 0.23
CLN3-255ENST00000637100 FUCA2Q9BTY2 467 aa16.46■□□□□ 0.23
CLN3-255ENST00000637100 FRMD8Q9BZ67 464 aaPredicted RBP16.46■□□□□ 0.23
CLN3-255ENST00000637100 WDR26Q9H7D7 661 aa16.46■□□□□ 0.23
CLN3-255ENST00000637100 AP4E1Q9UPM8 1137 aa16.46■□□□□ 0.23
CLN3-255ENST00000637100 ST14Q9Y5Y6 855 aa16.46■□□□□ 0.23
CLN3-255ENST00000637100 A0A1W2PQ67 120 aa16.45■□□□□ 0.22
CLN3-255ENST00000637100 ARHGAP6O43182 974 aa16.45■□□□□ 0.22
CLN3-255ENST00000637100 PEX11BO96011 259 aa16.45■□□□□ 0.22
CLN3-255ENST00000637100 ERCC2P18074 760 aa16.45■□□□□ 0.22
CLN3-255ENST00000637100 CD1CP29017 333 aa16.45■□□□□ 0.22
CLN3-255ENST00000637100 GPR3P46089 330 aa16.45■□□□□ 0.22
CLN3-255ENST00000637100 COPB1P53618 953 aaKnown RBP16.45■□□□□ 0.22
CLN3-255ENST00000637100 MAMLD1Q13495 774 aa16.45■□□□□ 0.22
CLN3-255ENST00000637100 ARHGEF7Q14155 803 aa16.45■□□□□ 0.22
CLN3-255ENST00000637100 MANEAQ5SRI9 462 aa16.45■□□□□ 0.22
CLN3-255ENST00000637100 CFAP58Q5T655 872 aa16.45■□□□□ 0.22
CLN3-255ENST00000637100 ERMARDQ5T6L9 678 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms