RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 SARDHQ9UL12 918 aa20.16■□□□□ 0.82
CLN3-250ENST00000636839 KIAA1549LQ6ZVL6 1849 aa20.16■□□□□ 0.82
CLN3-250ENST00000636839 A0A0J9YYE9 177 aa20.15■□□□□ 0.82
CLN3-250ENST00000636839 IQANK1A0A1B0GTG1 560 aa20.15■□□□□ 0.82
CLN3-250ENST00000636839 TRBC1P01850 177 aa20.15■□□□□ 0.82
CLN3-250ENST00000636839 AHSGP02765 367 aa20.15■□□□□ 0.82
CLN3-250ENST00000636839 IL12RB1P42701 662 aa20.15■□□□□ 0.82
CLN3-250ENST00000636839 GUCY1A3Q02108 690 aa20.15■□□□□ 0.82
CLN3-250ENST00000636839 ZNF470Q6ECI4 717 aa20.15■□□□□ 0.82
CLN3-250ENST00000636839 GDPD4Q6W3E5 623 aa20.15■□□□□ 0.82
CLN3-250ENST00000636839 STK40Q8N2I9 435 aa20.15■□□□□ 0.82
CLN3-250ENST00000636839 SLC44A3Q8N4M1 653 aa20.15■□□□□ 0.82
CLN3-250ENST00000636839 TUBGCP5Q96RT8 1024 aa20.15■□□□□ 0.82
CLN3-250ENST00000636839 CACNA2D2Q9NY47 1150 aa20.15■□□□□ 0.82
CLN3-250ENST00000636839 ZNF711Q9Y462 761 aa20.15■□□□□ 0.82
CLN3-250ENST00000636839 TICRRQ7Z2Z1 1910 aa20.15■□□□□ 0.82
CLN3-250ENST00000636839 NPIPB15A6NHN6 443 aaPredicted RBP20.15■□□□□ 0.82
CLN3-250ENST00000636839 CLDN7O95471 211 aa20.15■□□□□ 0.82
CLN3-250ENST00000636839 CRTAMO95727 393 aa20.15■□□□□ 0.82
CLN3-250ENST00000636839 GOT2P00505 430 aaKnown RBP20.15■□□□□ 0.82
CLN3-250ENST00000636839 MT-ND3P03897 115 aa20.15■□□□□ 0.82
CLN3-250ENST00000636839 SNRPAP09012 282 aaKnown RBP20.15■□□□□ 0.82
CLN3-250ENST00000636839 FOSL2P15408 326 aa20.15■□□□□ 0.82
CLN3-250ENST00000636839 PAMP19021 973 aa20.15■□□□□ 0.82
CLN3-250ENST00000636839 ATP5DP30049 168 aa20.15■□□□□ 0.82
CLN3-250ENST00000636839 WASP42768 502 aa20.15■□□□□ 0.82
CLN3-250ENST00000636839 ACVR1Q04771 509 aa20.15■□□□□ 0.82
CLN3-250ENST00000636839 THOC5Q13769 683 aaKnown RBP20.15■□□□□ 0.82
CLN3-250ENST00000636839 CDKN3Q16667 212 aa20.15■□□□□ 0.82
CLN3-250ENST00000636839 C9orf64Q5T6V5 341 aa20.15■□□□□ 0.82
CLN3-250ENST00000636839 ZNF449Q6P9G9 518 aa20.15■□□□□ 0.82
CLN3-250ENST00000636839 SH2D5Q6ZV89 423 aa20.15■□□□□ 0.82
CLN3-250ENST00000636839 NLRP9Q7RTR0 991 aa20.15■□□□□ 0.82
CLN3-250ENST00000636839 CDKN2AIPNLQ96HQ2 116 aa20.15■□□□□ 0.82
CLN3-250ENST00000636839 CPNE1Q99829 537 aa20.15■□□□□ 0.82
CLN3-250ENST00000636839 MCMBPQ9BTE3 642 aa20.15■□□□□ 0.82
CLN3-250ENST00000636839 TMEM245Q9H330 911 aa20.15■□□□□ 0.82
CLN3-250ENST00000636839 MTO1Q9Y2Z2 717 aaKnown RBP20.15■□□□□ 0.82
CLN3-250ENST00000636839 TMEM120BA0PK00 339 aa20.14■□□□□ 0.81
CLN3-250ENST00000636839 GPR39O43194 453 aa20.14■□□□□ 0.81
CLN3-250ENST00000636839 TIMM44O43615 452 aa20.14■□□□□ 0.81
CLN3-250ENST00000636839 SIN3BO75182 1162 aa20.14■□□□□ 0.81
CLN3-250ENST00000636839 RFPL1O75677 317 aa20.14■□□□□ 0.81
CLN3-250ENST00000636839 ITGA2BP08514 1039 aa20.14■□□□□ 0.81
CLN3-250ENST00000636839 PYGBP11216 843 aa20.14■□□□□ 0.81
CLN3-250ENST00000636839 GP5P40197 560 aa20.14■□□□□ 0.81
CLN3-250ENST00000636839 GRIA2P42262 883 aa20.14■□□□□ 0.81
CLN3-250ENST00000636839 SEC13P55735 322 aa20.14■□□□□ 0.81
CLN3-250ENST00000636839 PRAMEP78395 509 aa20.14■□□□□ 0.81
CLN3-250ENST00000636839 RAD51Q06609 339 aa20.14■□□□□ 0.81
CLN3-250ENST00000636839 SEMA3AQ14563 771 aa20.14■□□□□ 0.81
CLN3-250ENST00000636839 EIF4HQ15056 248 aaKnown RBP20.14■□□□□ 0.81
CLN3-250ENST00000636839 PLPP6Q8IY26 295 aa20.14■□□□□ 0.81
CLN3-250ENST00000636839 CSGALNACT1Q8TDX6 532 aa20.14■□□□□ 0.81
CLN3-250ENST00000636839 STYXQ8WUJ0 223 aa20.14■□□□□ 0.81
CLN3-250ENST00000636839 CAB39LQ9H9S4 337 aa20.14■□□□□ 0.81
CLN3-250ENST00000636839 MAGEE1Q9HCI5 957 aa20.14■□□□□ 0.81
CLN3-250ENST00000636839 HEBP1Q9NRV9 189 aa20.14■□□□□ 0.81
CLN3-250ENST00000636839 NLE1Q9NVX2 485 aaPredicted RBP20.14■□□□□ 0.81
CLN3-250ENST00000636839 TXNDC16Q9P2K2 825 aa20.14■□□□□ 0.81
CLN3-250ENST00000636839 IL36AQ9UHA7 158 aa20.14■□□□□ 0.81
CLN3-250ENST00000636839 SLC8A2Q9UPR5 921 aa20.14■□□□□ 0.81
CLN3-250ENST00000636839 COL6A3P12111 3177 aa20.14■□□□□ 0.81
CLN3-250ENST00000636839 F5P12259 2224 aa20.14■□□□□ 0.81
CLN3-250ENST00000636839 TRIOO75962 3097 aa20.14■□□□□ 0.81
CLN3-250ENST00000636839 C2orf81A6NN90 581 aa20.14■□□□□ 0.81
CLN3-250ENST00000636839 RPP40O75818 363 aaKnown RBP20.14■□□□□ 0.81
CLN3-250ENST00000636839 KRT37O76014 449 aa20.14■□□□□ 0.81
CLN3-250ENST00000636839 HAUS5O94927 633 aa20.14■□□□□ 0.81
CLN3-250ENST00000636839 LPOP22079 712 aaPredicted RBP20.14■□□□□ 0.81
CLN3-250ENST00000636839 CDKN1CP49918 316 aaPredicted RBP20.14■□□□□ 0.81
CLN3-250ENST00000636839 VASPP50552 380 aaPredicted RBP20.14■□□□□ 0.81
CLN3-250ENST00000636839 HNRNPA1L2Q32P51 320 aaKnown RBP20.14■□□□□ 0.81
CLN3-250ENST00000636839 PRPF38BQ5VTL8 546 aaKnown RBP20.14■□□□□ 0.81
CLN3-250ENST00000636839 FSTL4Q6MZW2 842 aa20.14■□□□□ 0.81
CLN3-250ENST00000636839 SERPINA13PQ6UXR4 307 aa20.14■□□□□ 0.81
CLN3-250ENST00000636839 CNTN4Q8IWV2 1026 aa20.14■□□□□ 0.81
CLN3-250ENST00000636839 DEFB123Q8N688 67 aa20.14■□□□□ 0.81
CLN3-250ENST00000636839 ANKRD42Q8N9B4 389 aa20.14■□□□□ 0.81
CLN3-250ENST00000636839 MGARPQ8TDB4 240 aa20.14■□□□□ 0.81
CLN3-250ENST00000636839 ZNF641Q96N77 438 aaPredicted RBP20.14■□□□□ 0.81
CLN3-250ENST00000636839 RBBP8Q99708 897 aa20.14■□□□□ 0.81
CLN3-250ENST00000636839 GPR63Q9BZJ6 419 aa20.14■□□□□ 0.81
CLN3-250ENST00000636839 FBXO6Q9NRD1 293 aaPredicted RBP20.14■□□□□ 0.81
CLN3-250ENST00000636839 FKBPLQ9UIM3 349 aa20.14■□□□□ 0.81
CLN3-250ENST00000636839 TCF20Q9UGU0 1960 aaKnown RBP20.13■□□□□ 0.81
CLN3-250ENST00000636839 ATG2BQ96BY7 2078 aa20.13■□□□□ 0.81
CLN3-250ENST00000636839 C1orf232A0A0U1RR37 186 aa20.13■□□□□ 0.81
CLN3-250ENST00000636839 NARSO43776 548 aaKnown RBP20.13■□□□□ 0.81
CLN3-250ENST00000636839 KRT38O76015 456 aa20.13■□□□□ 0.81
CLN3-250ENST00000636839 TOP3BO95985 862 aaKnown RBP20.13■□□□□ 0.81
CLN3-250ENST00000636839 ALDOAP04075 364 aaKnown RBP20.13■□□□□ 0.81
CLN3-250ENST00000636839 NAB1Q13506 487 aa20.13■□□□□ 0.81
CLN3-250ENST00000636839 TAOK1Q7L7X3 1001 aa20.13■□□□□ 0.81
CLN3-250ENST00000636839 OTUD6BQ8N6M0 293 aa20.13■□□□□ 0.81
CLN3-250ENST00000636839 FAM96AQ9H5X1 160 aa20.13■□□□□ 0.81
CLN3-250ENST00000636839 FBXO5Q9UKT4 447 aa20.13■□□□□ 0.81
CLN3-250ENST00000636839 MYO10Q9HD67 2058 aa20.13■□□□□ 0.81
CLN3-250ENST00000636839 K7EQS6 105 aa20.12■□□□□ 0.81
CLN3-250ENST00000636839 PLK4O00444 970 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms