RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 ITIH2P19823 946 aa11.96□□□□□ -0.49
UPF3B-204ENST00000619445 CCKBRP32239 447 aa11.96□□□□□ -0.49
UPF3B-204ENST00000619445 CDH6P55285 790 aa11.96□□□□□ -0.49
UPF3B-204ENST00000619445 SKOR1P84550 965 aa11.96□□□□□ -0.49
UPF3B-204ENST00000619445 VAC14Q08AM6 782 aa11.96□□□□□ -0.49
UPF3B-204ENST00000619445 DPYSQ14117 519 aa11.96□□□□□ -0.49
UPF3B-204ENST00000619445 CLPPQ16740 277 aaPredicted RBP11.96□□□□□ -0.49
UPF3B-204ENST00000619445 CA9Q16790 459 aa11.96□□□□□ -0.49
UPF3B-204ENST00000619445 ZNF571Q7Z3V5 609 aaPredicted RBP11.96□□□□□ -0.49
UPF3B-204ENST00000619445 RD3Q7Z3Z2 195 aa11.96□□□□□ -0.49
UPF3B-204ENST00000619445 KYQ8NBH2 561 aa11.96□□□□□ -0.49
UPF3B-204ENST00000619445 TEKT4Q8WW24 435 aa11.96□□□□□ -0.49
UPF3B-204ENST00000619445 SYN2Q92777 582 aaPredicted RBP11.96□□□□□ -0.49
UPF3B-204ENST00000619445 PEBP4Q96S96 227 aa11.96□□□□□ -0.49
UPF3B-204ENST00000619445 ISCUQ9H1K1 167 aa11.96□□□□□ -0.49
UPF3B-204ENST00000619445 SYNDIG1Q9H7V2 258 aa11.96□□□□□ -0.49
UPF3B-204ENST00000619445 PHPT1Q9NRX4 125 aaPredicted RBP11.96□□□□□ -0.49
UPF3B-204ENST00000619445 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.96□□□□□ -0.49
UPF3B-204ENST00000619445 CWC15Q9P013 229 aaKnown RBP11.96□□□□□ -0.49
UPF3B-204ENST00000619445 RCOR3Q9P2K3 495 aaPredicted RBP11.96□□□□□ -0.49
UPF3B-204ENST00000619445 PNMA8BQ9ULN7 279 aaPredicted RBP11.96□□□□□ -0.49
UPF3B-204ENST00000619445 SSUH2Q9Y2M2 353 aa11.96□□□□□ -0.49
UPF3B-204ENST00000619445 OR1A2Q9Y585 309 aa11.96□□□□□ -0.49
UPF3B-204ENST00000619445 A0A1B0GTH6 734 aa11.95□□□□□ -0.5
UPF3B-204ENST00000619445 TRAFD1O14545 582 aaPredicted RBP11.95□□□□□ -0.5
UPF3B-204ENST00000619445 PLD2O14939 933 aa11.95□□□□□ -0.5
UPF3B-204ENST00000619445 ATMINO43313 823 aaPredicted RBP11.95□□□□□ -0.5
UPF3B-204ENST00000619445 HTRA2O43464 458 aaPredicted RBP11.95□□□□□ -0.5
UPF3B-204ENST00000619445 ABCB7O75027 752 aa11.95□□□□□ -0.5
UPF3B-204ENST00000619445 SERPINC1P01008 464 aa11.95□□□□□ -0.5
UPF3B-204ENST00000619445 TEAD1P28347 426 aa11.95□□□□□ -0.5
UPF3B-204ENST00000619445 RGRP47804 291 aa11.95□□□□□ -0.5
UPF3B-204ENST00000619445 ZNF165P49910 485 aa11.95□□□□□ -0.5
UPF3B-204ENST00000619445 INHBCP55103 352 aa11.95□□□□□ -0.5
UPF3B-204ENST00000619445 RALGDSQ12967 914 aa11.95□□□□□ -0.5
UPF3B-204ENST00000619445 TAF1BQ53T94 588 aaPredicted RBP11.95□□□□□ -0.5
UPF3B-204ENST00000619445 CERCAMQ5T4B2 595 aa11.95□□□□□ -0.5
UPF3B-204ENST00000619445 OGFOD3Q6PK18 319 aa11.95□□□□□ -0.5
UPF3B-204ENST00000619445 RAB11FIP2Q7L804 512 aa11.95□□□□□ -0.5
UPF3B-204ENST00000619445 TAF8Q7Z7C8 310 aa11.95□□□□□ -0.5
UPF3B-204ENST00000619445 ATPAF2Q8N5M1 289 aa11.95□□□□□ -0.5
UPF3B-204ENST00000619445 ARFGAP1Q8N6T3 406 aa11.95□□□□□ -0.5
UPF3B-204ENST00000619445 NETO2Q8NC67 525 aa11.95□□□□□ -0.5
UPF3B-204ENST00000619445 GPR156Q8NFN8 814 aa11.95□□□□□ -0.5
UPF3B-204ENST00000619445 CCDC74AQ96AQ1 378 aa11.95□□□□□ -0.5
UPF3B-204ENST00000619445 NAF1Q96HR8 494 aaKnown RBP11.95□□□□□ -0.5
UPF3B-204ENST00000619445 NUDCD1Q96RS6 583 aa11.95□□□□□ -0.5
UPF3B-204ENST00000619445 SIRPGQ9P1W8 387 aa11.95□□□□□ -0.5
UPF3B-204ENST00000619445 LCMT1Q9UIC8 334 aa11.95□□□□□ -0.5
UPF3B-204ENST00000619445 ACSL6Q9UKU0 697 aa11.95□□□□□ -0.5
UPF3B-204ENST00000619445 DNPEPQ9ULA0 475 aa11.95□□□□□ -0.5
UPF3B-204ENST00000619445 PHTF1Q9UMS5 762 aa11.95□□□□□ -0.5
UPF3B-204ENST00000619445 SPTA1P02549 2419 aa11.95□□□□□ -0.5
UPF3B-204ENST00000619445 FLNBO75369 2602 aaKnown RBP11.94□□□□□ -0.5
UPF3B-204ENST00000619445 DDX3XO00571 662 aaKnown RBP eCLIP11.94□□□□□ -0.52e-9■■■□□ 14.7
UPF3B-204ENST00000619445 NUDT21O43809 227 aaKnown RBP11.94□□□□□ -0.5
UPF3B-204ENST00000619445 TNFSF15O95150 251 aa11.94□□□□□ -0.5
UPF3B-204ENST00000619445 CPP00450 1065 aa11.94□□□□□ -0.5
UPF3B-204ENST00000619445 RPLP0P05388 317 aaKnown RBP11.94□□□□□ -0.5
UPF3B-204ENST00000619445 PYGLP06737 847 aa11.94□□□□□ -0.5
UPF3B-204ENST00000619445 MYCLP1P12525 358 aaPredicted RBP11.94□□□□□ -0.5
UPF3B-204ENST00000619445 CES1P23141 567 aa11.94□□□□□ -0.5
UPF3B-204ENST00000619445 VIPR1P32241 457 aa11.94□□□□□ -0.5
UPF3B-204ENST00000619445 ILF3Q12906 894 aaKnown RBP eCLIP11.94□□□□□ -0.5
UPF3B-204ENST00000619445 ARHGEF7Q14155 803 aa11.94□□□□□ -0.5
UPF3B-204ENST00000619445 ACOX1Q15067 660 aa11.94□□□□□ -0.5
UPF3B-204ENST00000619445 MARC1Q5VT66 337 aa11.94□□□□□ -0.5
UPF3B-204ENST00000619445 PNCKQ6P2M8 343 aa11.94□□□□□ -0.5
UPF3B-204ENST00000619445 CRTC1Q6UUV9 634 aa11.94□□□□□ -0.5
UPF3B-204ENST00000619445 XKR5Q6UX68 686 aa11.94□□□□□ -0.5
UPF3B-204ENST00000619445 CYP4V2Q6ZWL3 525 aaPredicted RBP11.94□□□□□ -0.5
UPF3B-204ENST00000619445 USP45Q70EL2 814 aa11.94□□□□□ -0.5
UPF3B-204ENST00000619445 POLNQ7Z5Q5 900 aa11.94□□□□□ -0.5
UPF3B-204ENST00000619445 ZSWIM9Q86XI8 627 aa11.94□□□□□ -0.5
UPF3B-204ENST00000619445 CCNJLQ8IV13 435 aa11.94□□□□□ -0.5
UPF3B-204ENST00000619445 RAVER1Q8IY67 606 aaKnown RBP11.94□□□□□ -0.5
UPF3B-204ENST00000619445 FBXO39Q8N4B4 442 aa11.94□□□□□ -0.5
UPF3B-204ENST00000619445 NPWQ8N729 165 aa11.94□□□□□ -0.5
UPF3B-204ENST00000619445 NIPA2Q8N8Q9 360 aa11.94□□□□□ -0.5
UPF3B-204ENST00000619445 FAM46DQ8NEK8 389 aa11.94□□□□□ -0.5
UPF3B-204ENST00000619445 FUBP1Q96AE4 644 aaKnown RBP11.94□□□□□ -0.5
UPF3B-204ENST00000619445 NUS1Q96E22 293 aa11.94□□□□□ -0.5
UPF3B-204ENST00000619445 PDXPQ96GD0 296 aa11.94□□□□□ -0.5
UPF3B-204ENST00000619445 PRR11Q96HE9 360 aaPredicted RBP11.94□□□□□ -0.5
UPF3B-204ENST00000619445 MGME1Q9BQP7 344 aa11.94□□□□□ -0.5
UPF3B-204ENST00000619445 GSDMCQ9BYG8 508 aa11.94□□□□□ -0.5
UPF3B-204ENST00000619445 B3GNT4Q9C0J1 378 aa11.94□□□□□ -0.5
UPF3B-204ENST00000619445 LRRN3Q9H3W5 708 aa11.94□□□□□ -0.5
UPF3B-204ENST00000619445 CAAP1Q9H8G2 361 aa11.94□□□□□ -0.5
UPF3B-204ENST00000619445 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.94□□□□□ -0.5
UPF3B-204ENST00000619445 TRNAU1APQ9NX07 287 aaKnown RBP11.94□□□□□ -0.5
UPF3B-204ENST00000619445 AKAP7Q9P0M2 348 aaPredicted RBP11.94□□□□□ -0.5
UPF3B-204ENST00000619445 IP6K2Q9UHH9 426 aa11.94□□□□□ -0.5
UPF3B-204ENST00000619445 PIEZO2Q9H5I5 2752 aa11.94□□□□□ -0.5
UPF3B-204ENST00000619445 A0A1W2PQJ5 194 aa11.93□□□□□ -0.5
UPF3B-204ENST00000619445 PRSS38A1L453 326 aa11.93□□□□□ -0.5
UPF3B-204ENST00000619445 K7ENP7 123 aa11.93□□□□□ -0.5
UPF3B-204ENST00000619445 CELA2BP08218 269 aaPredicted RBP11.93□□□□□ -0.5
UPF3B-204ENST00000619445 JMJD7P0C870 316 aa11.93□□□□□ -0.5
UPF3B-204ENST00000619445 CA4P22748 312 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms