RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 CADM1Q9BY67 442 aaKnown RBP14.04□□□□□ -0.16
CPSF1-212ENST00000616140 CLK4Q9HAZ1 481 aaKnown RBP14.04□□□□□ -0.16
CPSF1-212ENST00000616140 RRAGCQ9HB90 399 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 DUX4Q9UBX2 424 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 PCDHA2Q9Y5H9 948 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 CCL22O00626 93 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 MGRN1O60291 552 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 TSC22D2O75157 780 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 LRATO95237 230 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 ZNF37AP17032 561 aaPredicted RBP14.04□□□□□ -0.16
CPSF1-212ENST00000616140 SGCGQ13326 291 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 AP5B1Q2VPB7 878 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 SLC10A6Q3KNW5 377 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 SREK1IP1Q8N9Q2 155 aaPredicted RBP14.04□□□□□ -0.16
CPSF1-212ENST00000616140 OR4K2Q8NGD2 314 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 OR52E6Q96RD3 313 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 COPS8Q99627 209 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 ATAD3AQ9NVI7 634 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 MTPAPQ9NVV4 582 aaKnown RBP eCLIP14.04□□□□□ -0.167e-8■□□□□ 8.9
CPSF1-212ENST00000616140 RPS6KB2Q9UBS0 482 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 U3KQV3 271 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 GRIN2DO15399 1336 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 MAP1BP46821 2468 aaKnown RBP14.04□□□□□ -0.16
CPSF1-212ENST00000616140 TRIM43BA6NCK2 446 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 ASNA1O43681 348 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 POLR2EP19388 210 aaKnown RBP14.04□□□□□ -0.16
CPSF1-212ENST00000616140 NRLP54845 237 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 MPP1Q00013 466 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 SPIRE1Q08AE8 756 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 GPR158Q5T848 1215 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 SH3PXD2AQ5TCZ1 1133 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 HECTD2Q5U5R9 776 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 ZNF540Q8NDQ6 660 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 ADCY4Q8NFM4 1077 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 DGCR14Q96DF8 476 aaKnown RBP14.04□□□□□ -0.16
CPSF1-212ENST00000616140 TBATAQ96M53 351 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 MRPS26Q9BYN8 205 aaKnown RBP14.04□□□□□ -0.16
CPSF1-212ENST00000616140 HDHD2Q9H0R4 259 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 TMPRSS4Q9NRS4 437 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 RPS6KA6Q9UK32 745 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 TBC1D30Q9Y2I9 924 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 SAMHD1Q9Y3Z3 626 aaKnown RBP14.04□□□□□ -0.16
CPSF1-212ENST00000616140 SMIM35A0A1B0GVV1 85 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 KLRG2A4D1S0 409 aaPredicted RBP14.04□□□□□ -0.16
CPSF1-212ENST00000616140 MT-CYBP00156 380 aaPredicted RBP14.04□□□□□ -0.16
CPSF1-212ENST00000616140 XIAPP98170 497 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 TAF10Q12962 218 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 PEX6Q13608 980 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 TARBP2Q15633 366 aaKnown RBP14.04□□□□□ -0.16
CPSF1-212ENST00000616140 DCAF12L1Q5VU92 463 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 ZCCHC8Q6NZY4 707 aaKnown RBP14.04□□□□□ -0.16
CPSF1-212ENST00000616140 TXNDC11Q6PKC3 985 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 FAM151BQ6UXP7 276 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 AMER2Q8N7J2 671 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 MAGEC3Q8TD91 643 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 WDR60Q8WVS4 1066 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 REXO5Q96IC2 774 aaKnown RBP14.04□□□□□ -0.16
CPSF1-212ENST00000616140 RSL24D1Q9UHA3 163 aaKnown RBP14.04□□□□□ -0.16
CPSF1-212ENST00000616140 TIMM22Q9Y584 194 aa14.04□□□□□ -0.16
CPSF1-212ENST00000616140 RFXANKO14593 260 aa14.03□□□□□ -0.16
CPSF1-212ENST00000616140 WBP4O75554 376 aaKnown RBP14.03□□□□□ -0.16
CPSF1-212ENST00000616140 ATXN1P54253 815 aaKnown RBP14.03□□□□□ -0.16
CPSF1-212ENST00000616140 FBXO48Q5FWF7 155 aa14.03□□□□□ -0.16
CPSF1-212ENST00000616140 HDDC2Q7Z4H3 204 aa14.03□□□□□ -0.16
CPSF1-212ENST00000616140 KRT73Q86Y46 540 aa14.03□□□□□ -0.16
CPSF1-212ENST00000616140 BANPQ8N9N5 519 aa14.03□□□□□ -0.16
CPSF1-212ENST00000616140 ATL1Q8WXF7 558 aa14.03□□□□□ -0.16
CPSF1-212ENST00000616140 TSSK3Q96PN8 268 aa14.03□□□□□ -0.16
CPSF1-212ENST00000616140 OSBPL10Q9BXB5 764 aa14.03□□□□□ -0.16
CPSF1-212ENST00000616140 RAD21L1Q9H4I0 556 aa14.03□□□□□ -0.16
CPSF1-212ENST00000616140 SSU72Q9NP77 194 aaKnown RBP14.03□□□□□ -0.16
CPSF1-212ENST00000616140 FADS3Q9Y5Q0 445 aa14.03□□□□□ -0.16
CPSF1-212ENST00000616140 C9JVG2 144 aa14.03□□□□□ -0.16
CPSF1-212ENST00000616140 PRMT5O14744 637 aaPredicted RBP14.03□□□□□ -0.16
CPSF1-212ENST00000616140 TREHO43280 583 aa14.03□□□□□ -0.16
CPSF1-212ENST00000616140 TSPAN1O60635 241 aa14.03□□□□□ -0.16
CPSF1-212ENST00000616140 GCATO75600 419 aa14.03□□□□□ -0.16
CPSF1-212ENST00000616140 VAV1P15498 845 aa14.03□□□□□ -0.16
CPSF1-212ENST00000616140 HNF4AP41235 474 aa14.03□□□□□ -0.16
CPSF1-212ENST00000616140 NAA20P61599 178 aa14.03□□□□□ -0.16
CPSF1-212ENST00000616140 ZNF781Q8N8C0 355 aa14.03□□□□□ -0.16
CPSF1-212ENST00000616140 LPGAT1Q92604 370 aa14.03□□□□□ -0.16
CPSF1-212ENST00000616140 AZIN2Q96A70 460 aa14.03□□□□□ -0.16
CPSF1-212ENST00000616140 PLEKHG4BQ96PX9 1271 aa14.03□□□□□ -0.16
CPSF1-212ENST00000616140 NDEL1Q9GZM8 345 aa14.03□□□□□ -0.16
CPSF1-212ENST00000616140 DPEP3Q9H4B8 488 aa14.03□□□□□ -0.16
CPSF1-212ENST00000616140 TMEM39AQ9NV64 488 aa14.03□□□□□ -0.16
CPSF1-212ENST00000616140 MYO5BQ9ULV0 1848 aa14.03□□□□□ -0.16
CPSF1-212ENST00000616140 KCNU1A8MYU2 1149 aa14.03□□□□□ -0.16
CPSF1-212ENST00000616140 LILRA4P59901 499 aa14.03□□□□□ -0.16
CPSF1-212ENST00000616140 DUSP4Q13115 394 aa14.03□□□□□ -0.16
CPSF1-212ENST00000616140 ESRP1Q6NXG1 681 aaKnown RBP14.03□□□□□ -0.16
CPSF1-212ENST00000616140 CROCCP3Q8IVE0 287 aa14.03□□□□□ -0.16
CPSF1-212ENST00000616140 OR2T12Q8NG77 320 aa14.03□□□□□ -0.16
CPSF1-212ENST00000616140 SERHL2Q9H4I8 314 aa14.03□□□□□ -0.16
CPSF1-212ENST00000616140 SERHLQ9NQF3 203 aa14.03□□□□□ -0.16
CPSF1-212ENST00000616140 KLHL1Q9NR64 748 aa14.03□□□□□ -0.16
CPSF1-212ENST00000616140 DTLQ9NZJ0 730 aa14.03□□□□□ -0.16
CPSF1-212ENST00000616140 ADAM30Q9UKF2 790 aa14.03□□□□□ -0.16
CPSF1-212ENST00000616140 GNEQ9Y223 722 aaKnown RBP14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 117.2 ms