RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 RABGEF1Q9UJ41 708 aa5.72□□□□□ -1.49
CPNE3-208ENST00000614678 ATP8A1Q9Y2Q0 1164 aa5.72□□□□□ -1.49
CPNE3-208ENST00000614678 U3KQA8 63 aa5.72□□□□□ -1.49
CPNE3-208ENST00000614678 AHCTF1Q8WYP5 2266 aa5.72□□□□□ -1.49
CPNE3-208ENST00000614678 A0A1B0GTQ1 180 aa5.72□□□□□ -1.49
CPNE3-208ENST00000614678 SIGLEC6O43699 453 aa5.72□□□□□ -1.49
CPNE3-208ENST00000614678 ADRB1P08588 477 aa5.72□□□□□ -1.49
CPNE3-208ENST00000614678 C1SP09871 688 aa5.72□□□□□ -1.49
CPNE3-208ENST00000614678 PRSS56P0CW18 603 aa5.72□□□□□ -1.49
CPNE3-208ENST00000614678 NFKB1P19838 968 aa5.72□□□□□ -1.49
CPNE3-208ENST00000614678 CTNNA1P35221 906 aaKnown RBP5.72□□□□□ -1.49
CPNE3-208ENST00000614678 RPS21P63220 83 aaKnown RBP5.72□□□□□ -1.49
CPNE3-208ENST00000614678 PPIDQ08752 370 aaKnown RBP5.72□□□□□ -1.49
CPNE3-208ENST00000614678 PDK2Q15119 407 aa5.72□□□□□ -1.49
CPNE3-208ENST00000614678 CDKN3Q16667 212 aa5.72□□□□□ -1.49
CPNE3-208ENST00000614678 DOK6Q6PKX4 331 aa5.72□□□□□ -1.49
CPNE3-208ENST00000614678 MARK2Q7KZI7 788 aaKnown RBP5.72□□□□□ -1.49
CPNE3-208ENST00000614678 CCDC13Q8IYE1 715 aa5.72□□□□□ -1.49
CPNE3-208ENST00000614678 ZNF567Q8N184 647 aa5.72□□□□□ -1.49
CPNE3-208ENST00000614678 SLC25A41Q8N5S1 370 aa5.72□□□□□ -1.49
CPNE3-208ENST00000614678 KIAA1524Q8TCG1 905 aa5.72□□□□□ -1.49
CPNE3-208ENST00000614678 FEM1CQ96JP0 617 aa5.72□□□□□ -1.49
CPNE3-208ENST00000614678 NUDCD1Q96RS6 583 aa5.72□□□□□ -1.49
CPNE3-208ENST00000614678 NRTNQ99748 197 aa5.72□□□□□ -1.49
CPNE3-208ENST00000614678 TDRD1Q9BXT4 1180 aaKnown RBP5.72□□□□□ -1.49
CPNE3-208ENST00000614678 FBRSQ9HAH7 460 aa5.72□□□□□ -1.49
CPNE3-208ENST00000614678 PREBQ9HCU5 417 aa5.72□□□□□ -1.49
CPNE3-208ENST00000614678 PRAMEF33A0A0G2JMD5 474 aa5.71□□□□□ -1.49
CPNE3-208ENST00000614678 PRR5-ARHGAP8B1AHC4 643 aa5.71□□□□□ -1.49
CPNE3-208ENST00000614678 PRAMEF26H0Y7S4 382 aa5.71□□□□□ -1.49
CPNE3-208ENST00000614678 PJA2O43164 708 aa5.71□□□□□ -1.49
CPNE3-208ENST00000614678 TM7SF2O76062 418 aa5.71□□□□□ -1.49
CPNE3-208ENST00000614678 ZRANB2O95218 330 aaKnown RBP eCLIP5.71□□□□□ -1.49
CPNE3-208ENST00000614678 PGLSO95336 258 aa5.71□□□□□ -1.49
CPNE3-208ENST00000614678 EML2O95834 649 aa5.71□□□□□ -1.49
CPNE3-208ENST00000614678 AGTP01019 485 aa5.71□□□□□ -1.49
CPNE3-208ENST00000614678 FTH1P19P0C7X4 201 aa5.71□□□□□ -1.49
CPNE3-208ENST00000614678 ZSCAN5DPP0CG00 497 aa5.71□□□□□ -1.49
CPNE3-208ENST00000614678 AK4P27144 223 aaPredicted RBP5.71□□□□□ -1.49
CPNE3-208ENST00000614678 CDC25BP30305 580 aa5.71□□□□□ -1.49
CPNE3-208ENST00000614678 PFN3P60673 137 aa5.71□□□□□ -1.49
CPNE3-208ENST00000614678 ARHGAP8P85298 464 aa5.71□□□□□ -1.49
CPNE3-208ENST00000614678 ACOX1Q15067 660 aa5.71□□□□□ -1.49
CPNE3-208ENST00000614678 KHDC1Q4VXA5 237 aaKnown RBP5.71□□□□□ -1.49
CPNE3-208ENST00000614678 TFDP3Q5H9I0 405 aa5.71□□□□□ -1.49
CPNE3-208ENST00000614678 ALS2CLQ60I27 953 aa5.71□□□□□ -1.49
CPNE3-208ENST00000614678 PPP1R2P3Q6NXS1 205 aa5.71□□□□□ -1.49
CPNE3-208ENST00000614678 ABI3BPQ7Z7G0 1075 aa5.71□□□□□ -1.49
CPNE3-208ENST00000614678 CEP76Q8TAP6 659 aa5.71□□□□□ -1.49
CPNE3-208ENST00000614678 TRAF3IP1Q8TDR0 691 aaPredicted RBP5.71□□□□□ -1.49
CPNE3-208ENST00000614678 HDAC11Q96DB2 347 aa5.71□□□□□ -1.49
CPNE3-208ENST00000614678 RTKNQ9BST9 563 aa5.71□□□□□ -1.49
CPNE3-208ENST00000614678 TMEM121Q9BTD3 319 aa5.71□□□□□ -1.49
CPNE3-208ENST00000614678 ATP13A3Q9H7F0 1226 aa5.71□□□□□ -1.49
CPNE3-208ENST00000614678 SIRPGQ9P1W8 387 aa5.71□□□□□ -1.49
CPNE3-208ENST00000614678 PCDHA3Q9Y5H8 950 aa5.71□□□□□ -1.49
CPNE3-208ENST00000614678 TRBV23OR9-2A0A075B6M9 112 aa5.71□□□□□ -1.5
CPNE3-208ENST00000614678 ZSCAN5CA6NGD5 496 aaPredicted RBP5.71□□□□□ -1.5
CPNE3-208ENST00000614678 FADS2P1A8MWK0 482 aa5.71□□□□□ -1.5
CPNE3-208ENST00000614678 ELFN1P0C7U0 828 aa5.71□□□□□ -1.5
CPNE3-208ENST00000614678 EPHA8P29322 1005 aaPredicted RBP5.71□□□□□ -1.5
CPNE3-208ENST00000614678 GRIA1P42261 906 aa5.71□□□□□ -1.5
CPNE3-208ENST00000614678 SGCGQ13326 291 aa5.71□□□□□ -1.5
CPNE3-208ENST00000614678 SNX1Q13596 522 aa5.71□□□□□ -1.5
CPNE3-208ENST00000614678 SETMARQ53H47 684 aaPredicted RBP5.71□□□□□ -1.5
CPNE3-208ENST00000614678 PRRT3Q5FWE3 981 aa5.71□□□□□ -1.5
CPNE3-208ENST00000614678 LYSMD3Q7Z3D4 306 aa5.71□□□□□ -1.5
CPNE3-208ENST00000614678 C11orf74Q86VG3 221 aa5.71□□□□□ -1.5
CPNE3-208ENST00000614678 MFSD2AQ8NA29 543 aa5.71□□□□□ -1.5
CPNE3-208ENST00000614678 BAHD1Q8TBE0 780 aaPredicted RBP5.71□□□□□ -1.5
CPNE3-208ENST00000614678 CXorf40AQ8TE69 158 aa5.71□□□□□ -1.5
CPNE3-208ENST00000614678 C1orf54Q8WWF1 131 aa5.71□□□□□ -1.5
CPNE3-208ENST00000614678 OR1E3Q8WZA6 343 aa5.71□□□□□ -1.5
CPNE3-208ENST00000614678 PPP1R16AQ96I34 528 aa5.71□□□□□ -1.5
CPNE3-208ENST00000614678 MS4A14Q96JA4 679 aa5.71□□□□□ -1.5
CPNE3-208ENST00000614678 CCDC114Q96M63 670 aa5.71□□□□□ -1.5
CPNE3-208ENST00000614678 IL12RB2Q99665 862 aa5.71□□□□□ -1.5
CPNE3-208ENST00000614678 TMEM168Q9H0V1 697 aa5.71□□□□□ -1.5
CPNE3-208ENST00000614678 INTUQ9ULD6 942 aa5.71□□□□□ -1.5
CPNE3-208ENST00000614678 PYCARDQ9ULZ3 195 aa5.71□□□□□ -1.5
CPNE3-208ENST00000614678 OAS3Q9Y6K5 1087 aaKnown RBP5.71□□□□□ -1.5
CPNE3-208ENST00000614678 SPTY2D1-AS1A0A0U1RR47 76 aa5.71□□□□□ -1.5
CPNE3-208ENST00000614678 LZTS3O60299 673 aaPredicted RBP5.71□□□□□ -1.5
CPNE3-208ENST00000614678 DESP17661 470 aa5.71□□□□□ -1.5
CPNE3-208ENST00000614678 CCNCP24863 283 aa5.71□□□□□ -1.5
CPNE3-208ENST00000614678 SERPINA4P29622 427 aa5.71□□□□□ -1.5
CPNE3-208ENST00000614678 LIMK1P53667 647 aa5.71□□□□□ -1.5
CPNE3-208ENST00000614678 HADHBP55084 474 aaKnown RBP5.71□□□□□ -1.5
CPNE3-208ENST00000614678 HNRNPDQ14103 355 aaKnown RBP5.71□□□□□ -1.5
CPNE3-208ENST00000614678 PRKD1Q15139 912 aaPredicted RBP5.71□□□□□ -1.5
CPNE3-208ENST00000614678 TCEAL1Q15170 157 aa5.71□□□□□ -1.5
CPNE3-208ENST00000614678 IFI16Q16666 785 aaKnown RBP5.71□□□□□ -1.5
CPNE3-208ENST00000614678 QPCTQ16769 361 aa5.71□□□□□ -1.5
CPNE3-208ENST00000614678 ALG11Q2TAA5 492 aa5.71□□□□□ -1.5
CPNE3-208ENST00000614678 ENPP7Q6UWV6 458 aa5.71□□□□□ -1.5
CPNE3-208ENST00000614678 DBX2Q6ZNG2 339 aa5.71□□□□□ -1.5
CPNE3-208ENST00000614678 ZNF761Q86XN6 746 aaPredicted RBP5.71□□□□□ -1.5
CPNE3-208ENST00000614678 PLPP6Q8IY26 295 aa5.71□□□□□ -1.5
CPNE3-208ENST00000614678 KATNAL2Q8IYT4 538 aa5.71□□□□□ -1.5
CPNE3-208ENST00000614678 TRIB3Q96RU7 358 aa5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms