RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 SDHAF4Q5VUM1 108 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 ZNF772Q68DY9 489 aaPredicted RBP12.63□□□□□ -0.39
LIG1-221ENST00000613670 PRMT9Q6P2P2 845 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 TAC4Q86UU9 113 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 OSTM1Q86WC4 334 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 CDYL2Q8N8U2 506 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 KDM1BQ8NB78 822 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 ITFG1Q8TB96 612 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 TWIST2Q8WVJ9 160 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 NPY6RQ99463 290 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 VRTNQ9H8Y1 702 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 SUCOQ9UBS9 1254 aaKnown RBP12.63□□□□□ -0.39
LIG1-221ENST00000613670 FBXW11Q9UKB1 542 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 IGKV6-21A0A0C4DH24 114 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 UBXN8O00124 270 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 HS6ST1O60243 411 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 KCNH1O95259 989 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 GSSP48637 474 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 LHX1P48742 406 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 RENBPP51606 427 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 PAFAH1B3Q15102 231 aaKnown RBP12.62□□□□□ -0.39
LIG1-221ENST00000613670 RGS21Q2M5E4 152 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 SAPCD2Q86UD0 394 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 SFRP1Q8N474 314 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 BORCS5Q969J3 196 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 SMARCD1Q96GM5 515 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 PCED1BQ96HM7 432 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 TBATAQ96M53 351 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 HNRNPABQ99729 332 aaKnown RBP12.62□□□□□ -0.39
LIG1-221ENST00000613670 FANCEQ9HB96 536 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 VPS45Q9NRW7 570 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 KANSL1LA0AUZ9 987 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 ANKRD33BA6NCL7 494 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 SOCS2O14508 198 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 PAGE1O75459 146 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 DDNO94850 711 aaPredicted RBP12.62□□□□□ -0.39
LIG1-221ENST00000613670 ITGBL1O95965 494 aaPredicted RBP12.62□□□□□ -0.39
LIG1-221ENST00000613670 UGT1A1P22309 533 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 UGT1A4P22310 534 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 DNAJB2P25686 324 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 UGT1A3P35503 534 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 UGT1A5P35504 534 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 RPS9P46781 194 aaKnown RBP12.62□□□□□ -0.39
LIG1-221ENST00000613670 TMTC4Q5T4D3 741 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 SPESP1Q6UW49 350 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 ZDHHC13Q8IUH4 622 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 MICU2Q8IYU8 434 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 CRYBG2Q8N1P7 616 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 SPPL2BQ8TCT7 592 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 ARMC7Q9H6L4 198 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 AKTIPQ9H8T0 292 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 PRDM16Q9HAZ2 1276 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 CNGB3Q9NQW8 809 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 SEPT3Q9UH03 358 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 U3KQV3 271 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 KIF13BQ9NQT8 1826 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 H3BNH8 94 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 TOR1BO14657 336 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 USP2O75604 605 aaPredicted RBP12.62□□□□□ -0.39
LIG1-221ENST00000613670 GNAO1P09471 354 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 RAD23AP54725 363 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 LIPEQ05469 1076 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 RAD51Q06609 339 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 RABL3Q5HYI8 236 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 OGFOD2Q6N063 350 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 KCNA7Q96RP8 456 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 HGH1Q9BTY7 390 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 SMPD3Q9NY59 655 aaPredicted RBP12.62□□□□□ -0.39
LIG1-221ENST00000613670 UXTQ9UBK9 157 aaPredicted RBP12.62□□□□□ -0.39
LIG1-221ENST00000613670 STRCQ7RTU9 1775 aa12.62□□□□□ -0.39
LIG1-221ENST00000613670 C1QAP02745 245 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 ITGB6P18564 788 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 PSMB9P28065 219 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 DPP6P42658 865 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 SCNN1GP51170 649 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 ARHGDIAP52565 204 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 C1QTNF8P60827 252 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 CDC42EP1Q00587 391 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 ECT2LQ008S8 904 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 TSTA3Q13630 321 aaPredicted RBP12.61□□□□□ -0.39
LIG1-221ENST00000613670 GRM2Q14416 872 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 ANGPTL8Q6UXH0 198 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 METTL6Q8TCB7 284 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 DQX1Q8TE96 717 aaKnown RBP12.61□□□□□ -0.39
LIG1-221ENST00000613670 GAB3Q8WWW8 586 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 CENPNQ96H22 339 aaPredicted RBP12.61□□□□□ -0.39
LIG1-221ENST00000613670 FAM193BQ96PV7 902 aaPredicted RBP12.61□□□□□ -0.39
LIG1-221ENST00000613670 SLC38A7Q9NVC3 462 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 CIDEBQ9UHD4 219 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 ZMYM5Q9UJ78 669 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 ATAD5Q96QE3 1844 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 ZBTB42B2RXF5 422 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 CBFA2T3O75081 653 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 GSRP00390 522 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 ZNF182P17025 639 aaPredicted RBP12.61□□□□□ -0.39
LIG1-221ENST00000613670 PPIL2Q13356 520 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 FAM98BQ52LJ0 330 aaKnown RBP12.61□□□□□ -0.39
LIG1-221ENST00000613670 CCDC92Q53HC0 331 aaPredicted RBP12.61□□□□□ -0.39
LIG1-221ENST00000613670 PLD3Q8IV08 490 aa12.61□□□□□ -0.39
LIG1-221ENST00000613670 CENPLQ8N0S6 344 aaPredicted RBP12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms