RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 H0Y858 1186 aa14.38□□□□□ -0.11
UPF1-211ENST00000600868 CTIFO43310 598 aaKnown RBP14.38□□□□□ -0.11
UPF1-211ENST00000600868 SLC34A2O95436 690 aa14.38□□□□□ -0.11
UPF1-211ENST00000600868 CRTAMO95727 393 aa14.38□□□□□ -0.11
UPF1-211ENST00000600868 TDGF1P13385 188 aa14.38□□□□□ -0.11
UPF1-211ENST00000600868 AVPR2P30518 371 aa14.38□□□□□ -0.11
UPF1-211ENST00000600868 ADPRHP54922 357 aa14.38□□□□□ -0.11
UPF1-211ENST00000600868 VSNL1P62760 191 aa14.38□□□□□ -0.11
UPF1-211ENST00000600868 PDE1BQ01064 536 aa14.38□□□□□ -0.11
UPF1-211ENST00000600868 DHX9Q08211 1270 aaKnown RBP14.38□□□□□ -0.11
UPF1-211ENST00000600868 RALGDSQ12967 914 aa14.38□□□□□ -0.11
UPF1-211ENST00000600868 MTM1Q13496 603 aa14.38□□□□□ -0.11
UPF1-211ENST00000600868 NAA30Q147X3 362 aaPredicted RBP14.38□□□□□ -0.11
UPF1-211ENST00000600868 POU6F1Q14863 301 aa14.38□□□□□ -0.11
UPF1-211ENST00000600868 PTPRRQ15256 657 aa14.38□□□□□ -0.11
UPF1-211ENST00000600868 TAF1AQ15573 450 aaPredicted RBP14.38□□□□□ -0.11
UPF1-211ENST00000600868 BBS9Q3SYG4 887 aa14.38□□□□□ -0.11
UPF1-211ENST00000600868 MSS51Q4VC12 460 aa14.38□□□□□ -0.11
UPF1-211ENST00000600868 PCID2Q5JVF3 399 aa14.38□□□□□ -0.11
UPF1-211ENST00000600868 NEK5Q6P3R8 708 aa14.38□□□□□ -0.11
UPF1-211ENST00000600868 NLRP9Q7RTR0 991 aa14.38□□□□□ -0.11
UPF1-211ENST00000600868 TMC3Q7Z5M5 1100 aa14.38□□□□□ -0.11
UPF1-211ENST00000600868 RAVER1Q8IY67 606 aaKnown RBP14.38□□□□□ -0.11
UPF1-211ENST00000600868 TTC30BQ8N4P2 665 aa14.38□□□□□ -0.11
UPF1-211ENST00000600868 OR14C36Q8NHC7 312 aa14.38□□□□□ -0.11
UPF1-211ENST00000600868 C19orf43Q9BQ61 176 aa14.38□□□□□ -0.11
UPF1-211ENST00000600868 PARD6BQ9BYG5 372 aa14.38□□□□□ -0.11
UPF1-211ENST00000600868 GPR63Q9BZJ6 419 aa14.38□□□□□ -0.11
UPF1-211ENST00000600868 ZFYVE1Q9HBF4 777 aa14.38□□□□□ -0.11
UPF1-211ENST00000600868 MRM3Q9HC36 420 aaKnown RBP14.38□□□□□ -0.11
UPF1-211ENST00000600868 PREBQ9HCU5 417 aa14.38□□□□□ -0.11
UPF1-211ENST00000600868 SYBUQ9NX95 663 aa14.38□□□□□ -0.11
UPF1-211ENST00000600868 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP14.38□□□□□ -0.11
UPF1-211ENST00000600868 RAB21Q9UL25 225 aa14.38□□□□□ -0.11
UPF1-211ENST00000600868 RIMKLBQ9ULI2 386 aa14.38□□□□□ -0.11
UPF1-211ENST00000600868 TCAF1Q9Y4C2 921 aa14.38□□□□□ -0.11
UPF1-211ENST00000600868 HEATR9A2RTY3 570 aa14.37□□□□□ -0.11
UPF1-211ENST00000600868 MROH6A6NGR9 719 aa14.37□□□□□ -0.11
UPF1-211ENST00000600868 PSMD11O00231 422 aa14.37□□□□□ -0.11
UPF1-211ENST00000600868 NEMP1O14524 444 aa14.37□□□□□ -0.11
UPF1-211ENST00000600868 AURKAO14965 403 aa14.37□□□□□ -0.11
UPF1-211ENST00000600868 AXIN1O15169 862 aa14.37□□□□□ -0.11
UPF1-211ENST00000600868 LDB2O43679 373 aa14.37□□□□□ -0.11
UPF1-211ENST00000600868 GPR37L1O60883 481 aa14.37□□□□□ -0.11
UPF1-211ENST00000600868 CLDN7O95471 211 aa14.37□□□□□ -0.11
UPF1-211ENST00000600868 LHCGRP22888 699 aa14.37□□□□□ -0.11
UPF1-211ENST00000600868 HMGCLP35914 325 aa14.37□□□□□ -0.11
UPF1-211ENST00000600868 STC1P52823 247 aa14.37□□□□□ -0.11
UPF1-211ENST00000600868 CRADDP78560 199 aa14.37□□□□□ -0.11
UPF1-211ENST00000600868 SEMG2Q02383 582 aa14.37□□□□□ -0.11
UPF1-211ENST00000600868 PDIA2Q13087 525 aaKnown RBP14.37□□□□□ -0.11
UPF1-211ENST00000600868 ARHGEF7Q14155 803 aa14.37□□□□□ -0.11
UPF1-211ENST00000600868 ELF2Q15723 593 aa14.37□□□□□ -0.11
UPF1-211ENST00000600868 CNGA3Q16281 694 aa14.37□□□□□ -0.11
UPF1-211ENST00000600868 MAP7D1Q3KQU3 841 aa14.37□□□□□ -0.11
UPF1-211ENST00000600868 LRRC66Q68CR7 880 aa14.37□□□□□ -0.11
UPF1-211ENST00000600868 DENND2CQ68D51 928 aa14.37□□□□□ -0.11
UPF1-211ENST00000600868 LIPIQ6XZB0 460 aa14.37□□□□□ -0.11
UPF1-211ENST00000600868 LYSMD3Q7Z3D4 306 aa14.37□□□□□ -0.11
UPF1-211ENST00000600868 GLT6D1Q7Z4J2 308 aa14.37□□□□□ -0.11
UPF1-211ENST00000600868 TSPAN33Q86UF1 283 aa14.37□□□□□ -0.11
UPF1-211ENST00000600868 MAML2Q8IZL2 1156 aaPredicted RBP14.37□□□□□ -0.11
UPF1-211ENST00000600868 AGGF1Q8N302 714 aaeCLIP14.37□□□□□ -0.11
UPF1-211ENST00000600868 CBARPQ8N350 705 aaPredicted RBP14.37□□□□□ -0.11
UPF1-211ENST00000600868 MPP5Q8N3R9 675 aa14.37□□□□□ -0.11
UPF1-211ENST00000600868 PPHLN1Q8NEY8 458 aaKnown RBP14.37□□□□□ -0.11
UPF1-211ENST00000600868 PEX13Q92968 403 aa14.37□□□□□ -0.11
UPF1-211ENST00000600868 NAT9Q9BTE0 207 aa14.37□□□□□ -0.11
UPF1-211ENST00000600868 KIFC1Q9BW19 673 aa14.37□□□□□ -0.11
UPF1-211ENST00000600868 BTBD1Q9H0C5 482 aa14.37□□□□□ -0.11
UPF1-211ENST00000600868 CD93Q9NPY3 652 aa14.37□□□□□ -0.11
UPF1-211ENST00000600868 C11orf16Q9NQ32 467 aa14.37□□□□□ -0.11
UPF1-211ENST00000600868 SAMD15Q9P1V8 674 aa14.37□□□□□ -0.11
UPF1-211ENST00000600868 GGT7Q9UJ14 662 aa14.37□□□□□ -0.11
UPF1-211ENST00000600868 FBXO4Q9UKT5 387 aa14.37□□□□□ -0.11
UPF1-211ENST00000600868 SOX13Q9UN79 622 aa14.37□□□□□ -0.11
UPF1-211ENST00000600868 ITM2BQ9Y287 266 aa14.37□□□□□ -0.11
UPF1-211ENST00000600868 ARL5AQ9Y689 179 aa14.37□□□□□ -0.11
UPF1-211ENST00000600868 TEX264Q9Y6I9 313 aa14.37□□□□□ -0.11
UPF1-211ENST00000600868 MUC3AQ02505 3323 aa14.37□□□□□ -0.11
UPF1-211ENST00000600868 LRRC72A6NJI9 287 aa14.36□□□□□ -0.11
UPF1-211ENST00000600868 C2orf81A6NN90 581 aa14.36□□□□□ -0.11
UPF1-211ENST00000600868 A8MX80 341 aa14.36□□□□□ -0.11
UPF1-211ENST00000600868 ELFN1P0C7U0 828 aa14.36□□□□□ -0.11
UPF1-211ENST00000600868 MYBL2P10244 700 aa14.36□□□□□ -0.11
UPF1-211ENST00000600868 LPOP22079 712 aaPredicted RBP14.36□□□□□ -0.11
UPF1-211ENST00000600868 PSMA3P25788 255 aa14.36□□□□□ -0.11
UPF1-211ENST00000600868 CD6P30203 668 aa14.36□□□□□ -0.11
UPF1-211ENST00000600868 ACSL1P33121 698 aa14.36□□□□□ -0.11
UPF1-211ENST00000600868 ELK3P41970 407 aa14.36□□□□□ -0.11
UPF1-211ENST00000600868 PXNP49023 591 aaPredicted RBP14.36□□□□□ -0.11
UPF1-211ENST00000600868 LIG3P49916 1009 aa14.36□□□□□ -0.11
UPF1-211ENST00000600868 CREB5Q02930 508 aa14.36□□□□□ -0.11
UPF1-211ENST00000600868 PTSQ03393 145 aa14.36□□□□□ -0.11
UPF1-211ENST00000600868 SEPT6Q14141 434 aa14.36□□□□□ -0.11
UPF1-211ENST00000600868 CCDC38Q502W7 563 aa14.36□□□□□ -0.11
UPF1-211ENST00000600868 USP39Q53GS9 565 aaKnown RBP14.36□□□□□ -0.11
UPF1-211ENST00000600868 FAM124AQ86V42 546 aa14.36□□□□□ -0.11
UPF1-211ENST00000600868 CCDC25Q86WR0 208 aa14.36□□□□□ -0.11
UPF1-211ENST00000600868 RELL1Q8IUW5 271 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms