RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 SP110Q9HB58 689 aa20.28■□□□□ 0.84
SHKBP1-225ENST00000600733 GMPR2Q9P2T1 348 aaKnown RBP20.28■□□□□ 0.84
SHKBP1-225ENST00000600733 A0A0U1RQF3 1178 aa20.28■□□□□ 0.84
SHKBP1-225ENST00000600733 C7orf72A4D263 438 aa20.28■□□□□ 0.84
SHKBP1-225ENST00000600733 VILLO15195 856 aa20.28■□□□□ 0.84
SHKBP1-225ENST00000600733 PAPSS2O95340 614 aaPredicted RBP20.28■□□□□ 0.84
SHKBP1-225ENST00000600733 WISP3O95389 354 aaPredicted RBP20.28■□□□□ 0.84
SHKBP1-225ENST00000600733 ETFBP38117 255 aa20.28■□□□□ 0.84
SHKBP1-225ENST00000600733 RGS2P41220 211 aa20.28■□□□□ 0.84
SHKBP1-225ENST00000600733 RHDQ02161 417 aa20.28■□□□□ 0.84
SHKBP1-225ENST00000600733 NRG1Q02297 640 aaPredicted RBP20.28■□□□□ 0.84
SHKBP1-225ENST00000600733 GALNT1Q10472 559 aaPredicted RBP20.28■□□□□ 0.84
SHKBP1-225ENST00000600733 DYNC1I2Q13409 638 aaKnown RBP20.28■□□□□ 0.84
SHKBP1-225ENST00000600733 PTPRCAPQ14761 206 aa20.28■□□□□ 0.84
SHKBP1-225ENST00000600733 DDR2Q16832 855 aa20.28■□□□□ 0.84
SHKBP1-225ENST00000600733 MS4A13Q5J8X5 152 aa20.28■□□□□ 0.84
SHKBP1-225ENST00000600733 PITRM1Q5JRX3 1037 aa20.28■□□□□ 0.84
SHKBP1-225ENST00000600733 ZNF683Q8IZ20 524 aa20.28■□□□□ 0.84
SHKBP1-225ENST00000600733 PGBD5Q8N414 524 aa20.28■□□□□ 0.84
SHKBP1-225ENST00000600733 GABPB2Q8TAK5 448 aaPredicted RBP20.28■□□□□ 0.84
SHKBP1-225ENST00000600733 DGCR14Q96DF8 476 aaKnown RBP20.28■□□□□ 0.84
SHKBP1-225ENST00000600733 C1orf74Q96LT6 269 aa20.28■□□□□ 0.84
SHKBP1-225ENST00000600733 MFSD1Q9H3U5 465 aa20.28■□□□□ 0.84
SHKBP1-225ENST00000600733 ZNF696Q9H7X3 374 aa20.28■□□□□ 0.84
SHKBP1-225ENST00000600733 COQ10BQ9H8M1 238 aa20.28■□□□□ 0.84
SHKBP1-225ENST00000600733 VPS45Q9NRW7 570 aa20.28■□□□□ 0.84
SHKBP1-225ENST00000600733 RGS18Q9NS28 235 aa20.28■□□□□ 0.84
SHKBP1-225ENST00000600733 TLR6Q9Y2C9 796 aa20.28■□□□□ 0.84
SHKBP1-225ENST00000600733 PTGDR2Q9Y5Y4 395 aa20.28■□□□□ 0.84
SHKBP1-225ENST00000600733 A0A1B0GTW7 788 aa20.27■□□□□ 0.84
SHKBP1-225ENST00000600733 PPP6CO00743 305 aa20.27■□□□□ 0.84
SHKBP1-225ENST00000600733 SLC7A4O43246 635 aa20.27■□□□□ 0.84
SHKBP1-225ENST00000600733 NRP2O60462 931 aa20.27■□□□□ 0.84
SHKBP1-225ENST00000600733 CELF2O95319 508 aaKnown RBP20.27■□□□□ 0.84
SHKBP1-225ENST00000600733 MYCNP04198 464 aaPredicted RBP20.27■□□□□ 0.84
SHKBP1-225ENST00000600733 ALDOCP09972 364 aaKnown RBP20.27■□□□□ 0.84
SHKBP1-225ENST00000600733 FAM58BPP0C7Q3 252 aa20.27■□□□□ 0.84
SHKBP1-225ENST00000600733 HSPA13P48723 471 aa20.27■□□□□ 0.84
SHKBP1-225ENST00000600733 C6orf10Q5SRN2 563 aa20.27■□□□□ 0.84
SHKBP1-225ENST00000600733 RYBPQ8N488 228 aaPredicted RBP20.27■□□□□ 0.84
SHKBP1-225ENST00000600733 C19orf60Q96EN9 201 aa20.27■□□□□ 0.84
SHKBP1-225ENST00000600733 SLC39A13Q96H72 371 aa20.27■□□□□ 0.84
SHKBP1-225ENST00000600733 TBATAQ96M53 351 aa20.27■□□□□ 0.84
SHKBP1-225ENST00000600733 SLC25A23Q9BV35 468 aa20.27■□□□□ 0.84
SHKBP1-225ENST00000600733 ZYG11BQ9C0D3 744 aa20.27■□□□□ 0.84
SHKBP1-225ENST00000600733 PRDM5Q9NQX1 630 aaPredicted RBP20.27■□□□□ 0.84
SHKBP1-225ENST00000600733 NDUFA13Q9P0J0 144 aa20.27■□□□□ 0.84
SHKBP1-225ENST00000600733 CD300AQ9UGN4 299 aa20.27■□□□□ 0.84
SHKBP1-225ENST00000600733 GTF3C5Q9Y5Q8 519 aaPredicted RBP20.27■□□□□ 0.84
SHKBP1-225ENST00000600733 CLGNO14967 610 aa20.27■□□□□ 0.83
SHKBP1-225ENST00000600733 B4GALT3O60512 393 aa20.27■□□□□ 0.83
SHKBP1-225ENST00000600733 DUSP11O75319 330 aaKnown RBP20.27■□□□□ 0.83
SHKBP1-225ENST00000600733 TRPA1O75762 1119 aa20.27■□□□□ 0.83
SHKBP1-225ENST00000600733 NDST2P52849 883 aa20.27■□□□□ 0.83
SHKBP1-225ENST00000600733 NME5P56597 212 aa20.27■□□□□ 0.83
SHKBP1-225ENST00000600733 LARP7Q4G0J3 582 aaKnown RBP eCLIP20.27■□□□□ 0.83
SHKBP1-225ENST00000600733 UNC50Q53HI1 259 aa20.27■□□□□ 0.83
SHKBP1-225ENST00000600733 ARMC3Q5W041 872 aa20.27■□□□□ 0.83
SHKBP1-225ENST00000600733 FUNDC1Q8IVP5 155 aa20.27■□□□□ 0.83
SHKBP1-225ENST00000600733 C2orf69Q8N8R5 385 aa20.27■□□□□ 0.83
SHKBP1-225ENST00000600733 MRPS26Q9BYN8 205 aaKnown RBP20.27■□□□□ 0.83
SHKBP1-225ENST00000600733 GIMAP2Q9UG22 337 aa20.27■□□□□ 0.83
SHKBP1-225ENST00000600733 SNX13Q9Y5W8 968 aa20.27■□□□□ 0.83
SHKBP1-225ENST00000600733 LDB2O43679 373 aa20.26■□□□□ 0.83
SHKBP1-225ENST00000600733 TBX18O95935 607 aa20.26■□□□□ 0.83
SHKBP1-225ENST00000600733 RHOQP17081 205 aa20.26■□□□□ 0.83
SHKBP1-225ENST00000600733 TBX4P57082 545 aa20.26■□□□□ 0.83
SHKBP1-225ENST00000600733 USP46P62068 366 aa20.26■□□□□ 0.83
SHKBP1-225ENST00000600733 TAF1CQ15572 869 aaPredicted RBP20.26■□□□□ 0.83
SHKBP1-225ENST00000600733 MTX3Q5HYI7 312 aa20.26■□□□□ 0.83
SHKBP1-225ENST00000600733 CIR1Q86X95 450 aaPredicted RBP20.26■□□□□ 0.83
SHKBP1-225ENST00000600733 HERC6Q8IVU3 1022 aa20.26■□□□□ 0.83
SHKBP1-225ENST00000600733 L3HYPDHQ96EM0 354 aa20.26■□□□□ 0.83
SHKBP1-225ENST00000600733 SLC2A11Q9BYW1 496 aa20.26■□□□□ 0.83
SHKBP1-225ENST00000600733 MRPL40Q9NQ50 206 aaKnown RBP20.26■□□□□ 0.83
SHKBP1-225ENST00000600733 MRGBPQ9NV56 204 aa20.26■□□□□ 0.83
SHKBP1-225ENST00000600733 POLR3BQ9NW08 1133 aaPredicted RBP20.26■□□□□ 0.83
SHKBP1-225ENST00000600733 TMEM181Q9P2C4 612 aa20.26■□□□□ 0.83
SHKBP1-225ENST00000600733 CROTQ9UKG9 612 aa20.26■□□□□ 0.83
SHKBP1-225ENST00000600733 LRRC14BA6NHZ5 514 aa20.25■□□□□ 0.83
SHKBP1-225ENST00000600733 SIX3O95343 332 aaPredicted RBP20.25■□□□□ 0.83
SHKBP1-225ENST00000600733 ATXN1LP0C7T5 689 aaKnown RBP20.25■□□□□ 0.83
SHKBP1-225ENST00000600733 GRK4P32298 578 aa20.25■□□□□ 0.83
SHKBP1-225ENST00000600733 SLC7A2P52569 658 aa20.25■□□□□ 0.83
SHKBP1-225ENST00000600733 SH3BP2P78314 561 aa20.25■□□□□ 0.83
SHKBP1-225ENST00000600733 EFEMP1Q12805 493 aa20.25■□□□□ 0.83
SHKBP1-225ENST00000600733 UGT3A2Q3SY77 523 aa20.25■□□□□ 0.83
SHKBP1-225ENST00000600733 ZNF549Q6P9A3 640 aa20.25■□□□□ 0.83
SHKBP1-225ENST00000600733 GALNT7Q86SF2 657 aa20.25■□□□□ 0.83
SHKBP1-225ENST00000600733 AMIGO2Q86SJ2 522 aa20.25■□□□□ 0.83
SHKBP1-225ENST00000600733 ARRDC2Q8TBH0 407 aa20.25■□□□□ 0.83
SHKBP1-225ENST00000600733 GPR152Q8TDT2 470 aa20.25■□□□□ 0.83
SHKBP1-225ENST00000600733 IGSF8Q969P0 613 aa20.25■□□□□ 0.83
SHKBP1-225ENST00000600733 TOP1MTQ969P6 601 aa20.25■□□□□ 0.83
SHKBP1-225ENST00000600733 TRMOQ9BU70 441 aa20.25■□□□□ 0.83
SHKBP1-225ENST00000600733 TMEM248Q9NWD8 314 aa20.25■□□□□ 0.83
SHKBP1-225ENST00000600733 CNOT11Q9UKZ1 510 aaKnown RBP20.25■□□□□ 0.83
SHKBP1-225ENST00000600733 ARL5AQ9Y689 179 aa20.25■□□□□ 0.83
SHKBP1-225ENST00000600733 CCDC160A6NGH7 325 aa20.25■□□□□ 0.83
SHKBP1-225ENST00000600733 SRP72O76094 671 aaKnown RBP20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms