RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 ALDOCP09972 364 aaKnown RBP18.4■□□□□ 0.54
UPF1-210ENST00000600689 ATP5F1P24539 256 aaPredicted RBP18.4■□□□□ 0.54
UPF1-210ENST00000600689 ADRA1BP35368 520 aa18.4■□□□□ 0.54
UPF1-210ENST00000600689 PPP1R8Q12972 351 aaKnown RBP18.4■□□□□ 0.54
UPF1-210ENST00000600689 GRIK4Q16099 956 aa18.4■□□□□ 0.54
UPF1-210ENST00000600689 CCL15Q16663 113 aa18.4■□□□□ 0.54
UPF1-210ENST00000600689 FAM187BQ17R55 369 aa18.4■□□□□ 0.54
UPF1-210ENST00000600689 C1QTNF12Q5T7M4 302 aa18.4■□□□□ 0.54
UPF1-210ENST00000600689 PIWIL4Q7Z3Z4 852 aaKnown RBP18.4■□□□□ 0.54
UPF1-210ENST00000600689 EMID1Q96A84 441 aaPredicted RBP18.4■□□□□ 0.54
UPF1-210ENST00000600689 DGCR6LQ9BY27 220 aa18.4■□□□□ 0.54
UPF1-210ENST00000600689 NXF3Q9H4D5 531 aaKnown RBP18.4■□□□□ 0.54
UPF1-210ENST00000600689 UBFD1O14562 309 aaKnown RBP18.4■□□□□ 0.54
UPF1-210ENST00000600689 ANGPT2O15123 496 aa18.4■□□□□ 0.54
UPF1-210ENST00000600689 SERPINB7O75635 380 aa18.4■□□□□ 0.54
UPF1-210ENST00000600689 CAPNS1P04632 268 aa18.4■□□□□ 0.54
UPF1-210ENST00000600689 ADSLP30566 484 aaPredicted RBP18.4■□□□□ 0.54
UPF1-210ENST00000600689 TMED10P49755 219 aaKnown RBP18.4■□□□□ 0.54
UPF1-210ENST00000600689 BCAP31P51572 246 aa18.4■□□□□ 0.54
UPF1-210ENST00000600689 TKTL1P51854 596 aa18.4■□□□□ 0.54
UPF1-210ENST00000600689 ANKRD26P1Q6NSI1 321 aa18.4■□□□□ 0.54
UPF1-210ENST00000600689 TMEM214Q6NUQ4 689 aaKnown RBP18.4■□□□□ 0.54
UPF1-210ENST00000600689 ZDHHC17Q8IUH5 632 aa18.4■□□□□ 0.54
UPF1-210ENST00000600689 DHRSXQ8N5I4 330 aa18.4■□□□□ 0.54
UPF1-210ENST00000600689 OR52K2Q8NGK3 314 aa18.4■□□□□ 0.54
UPF1-210ENST00000600689 SH3RF2Q8TEC5 729 aa18.4■□□□□ 0.54
UPF1-210ENST00000600689 BRI3BPQ8WY22 251 aa18.4■□□□□ 0.54
UPF1-210ENST00000600689 TMEM181Q9P2C4 612 aa18.4■□□□□ 0.54
UPF1-210ENST00000600689 KANSL1LA0AUZ9 987 aa18.39■□□□□ 0.54
UPF1-210ENST00000600689 YJEFN3A6XGL0 299 aa18.39■□□□□ 0.54
UPF1-210ENST00000600689 BAIAP3O94812 1187 aa18.39■□□□□ 0.54
UPF1-210ENST00000600689 NOS2P35228 1153 aa18.39■□□□□ 0.54
UPF1-210ENST00000600689 ZNF829Q3KNS6 432 aaPredicted RBP18.39■□□□□ 0.54
UPF1-210ENST00000600689 PRAMEF19Q5SWL8 479 aa18.39■□□□□ 0.54
UPF1-210ENST00000600689 BTBD8Q5XKL5 378 aa18.39■□□□□ 0.54
UPF1-210ENST00000600689 PIWIL3Q7Z3Z3 882 aaKnown RBP18.39■□□□□ 0.54
UPF1-210ENST00000600689 PIM3Q86V86 326 aa18.39■□□□□ 0.54
UPF1-210ENST00000600689 ANKRD49Q8WVL7 239 aa18.39■□□□□ 0.54
UPF1-210ENST00000600689 TMEM74Q96NL1 305 aa18.39■□□□□ 0.54
UPF1-210ENST00000600689 ULBP1Q9BZM6 244 aa18.39■□□□□ 0.54
UPF1-210ENST00000600689 PLEKHA5Q9HAU0 1116 aa18.39■□□□□ 0.54
UPF1-210ENST00000600689 STAP1Q9ULZ2 295 aa18.39■□□□□ 0.54
UPF1-210ENST00000600689 SHROOM3Q8TF72 1996 aa18.39■□□□□ 0.53
UPF1-210ENST00000600689 SLC22A2O15244 555 aa18.39■□□□□ 0.53
UPF1-210ENST00000600689 USP17L7P0C7H9 530 aa18.39■□□□□ 0.53
UPF1-210ENST00000600689 CDH3P22223 829 aa18.39■□□□□ 0.53
UPF1-210ENST00000600689 NPY2RP49146 381 aa18.39■□□□□ 0.53
UPF1-210ENST00000600689 CCNA1P78396 465 aa18.39■□□□□ 0.53
UPF1-210ENST00000600689 ECT2LQ008S8 904 aa18.39■□□□□ 0.53
UPF1-210ENST00000600689 GRB7Q14451 532 aa18.39■□□□□ 0.53
UPF1-210ENST00000600689 CARTPTQ16568 116 aa18.39■□□□□ 0.53
UPF1-210ENST00000600689 VTA1Q9NP79 307 aa18.39■□□□□ 0.53
UPF1-210ENST00000600689 MRPL40Q9NQ50 206 aaKnown RBP18.39■□□□□ 0.53
UPF1-210ENST00000600689 SACM1LQ9NTJ5 587 aa18.39■□□□□ 0.53
UPF1-210ENST00000600689 TBCCD1Q9NVR7 557 aa18.39■□□□□ 0.53
UPF1-210ENST00000600689 TTC24A2A3L6 582 aaPredicted RBP18.38■□□□□ 0.53
UPF1-210ENST00000600689 KPNA6O60684 536 aa18.38■□□□□ 0.53
UPF1-210ENST00000600689 HSPA1AP0DMV8 641 aaKnown RBP18.38■□□□□ 0.53
UPF1-210ENST00000600689 HSPA1BP0DMV9 641 aaKnown RBP18.38■□□□□ 0.53
UPF1-210ENST00000600689 CPB1P15086 417 aa18.38■□□□□ 0.53
UPF1-210ENST00000600689 CAPN3P20807 821 aa18.38■□□□□ 0.53
UPF1-210ENST00000600689 KCNC1P48547 511 aa18.38■□□□□ 0.53
UPF1-210ENST00000600689 CREB5Q02930 508 aa18.38■□□□□ 0.53
UPF1-210ENST00000600689 PAFAH1B3Q15102 231 aaKnown RBP18.38■□□□□ 0.53
UPF1-210ENST00000600689 PLA2G4EQ3MJ16 856 aa18.38■□□□□ 0.53
UPF1-210ENST00000600689 KCTD11Q693B1 232 aa18.38■□□□□ 0.53
UPF1-210ENST00000600689 ALDH16A1Q8IZ83 802 aa18.38■□□□□ 0.53
UPF1-210ENST00000600689 TMCO5AQ8N6Q1 288 aa18.38■□□□□ 0.53
UPF1-210ENST00000600689 ANKFN1Q8N957 763 aa18.38■□□□□ 0.53
UPF1-210ENST00000600689 WNT8BQ93098 351 aa18.38■□□□□ 0.53
UPF1-210ENST00000600689 MRPL57Q9BQC6 102 aaKnown RBP18.38■□□□□ 0.53
UPF1-210ENST00000600689 ING2Q9H160 280 aa18.38■□□□□ 0.53
UPF1-210ENST00000600689 AKTIPQ9H8T0 292 aa18.38■□□□□ 0.53
UPF1-210ENST00000600689 FBXO5Q9UKT4 447 aa18.38■□□□□ 0.53
UPF1-210ENST00000600689 CRYL1Q9Y2S2 319 aa18.38■□□□□ 0.53
UPF1-210ENST00000600689 TTC36A6NLP5 189 aa18.38■□□□□ 0.53
UPF1-210ENST00000600689 CD151P48509 253 aa18.38■□□□□ 0.53
UPF1-210ENST00000600689 MLLT10P55197 1068 aa18.38■□□□□ 0.53
UPF1-210ENST00000600689 INPP5AQ14642 412 aa18.38■□□□□ 0.53
UPF1-210ENST00000600689 IMPG1Q17R60 797 aa18.38■□□□□ 0.53
UPF1-210ENST00000600689 NAPEPLDQ6IQ20 393 aa18.38■□□□□ 0.53
UPF1-210ENST00000600689 GPR142Q7Z601 462 aa18.38■□□□□ 0.53
UPF1-210ENST00000600689 SLC15A3Q8IY34 581 aa18.38■□□□□ 0.53
UPF1-210ENST00000600689 AFAP1L2Q8N4X5 818 aa18.38■□□□□ 0.53
UPF1-210ENST00000600689 SMG8Q8ND04 991 aaKnown RBP18.38■□□□□ 0.53
UPF1-210ENST00000600689 MAELQ96JY0 434 aaKnown RBP18.38■□□□□ 0.53
UPF1-210ENST00000600689 DNAI2Q9GZS0 605 aa18.38■□□□□ 0.53
UPF1-210ENST00000600689 CFAP99D6REC4 459 aa18.38■□□□□ 0.53
UPF1-210ENST00000600689 IPO13O94829 963 aaKnown RBP18.38■□□□□ 0.53
UPF1-210ENST00000600689 LINC00032P0C843 101 aa18.38■□□□□ 0.53
UPF1-210ENST00000600689 FOXA1P55317 472 aa18.38■□□□□ 0.53
UPF1-210ENST00000600689 LSM3P62310 102 aaKnown RBP18.38■□□□□ 0.53
UPF1-210ENST00000600689 GSTM4Q03013 218 aa18.38■□□□□ 0.53
UPF1-210ENST00000600689 GPR158Q5T848 1215 aa18.38■□□□□ 0.53
UPF1-210ENST00000600689 PKN3Q6P5Z2 889 aa18.38■□□□□ 0.53
UPF1-210ENST00000600689 TBPL2Q6SJ96 375 aa18.38■□□□□ 0.53
UPF1-210ENST00000600689 ABRAXAS1Q6UWZ7 409 aa18.38■□□□□ 0.53
UPF1-210ENST00000600689 PDZD4Q76G19 769 aaPredicted RBP18.38■□□□□ 0.53
UPF1-210ENST00000600689 TNIP2Q8NFZ5 429 aa18.38■□□□□ 0.53
UPF1-210ENST00000600689 OR6P1Q8NGX9 317 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms