RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 LRCH4O75427 683 aa17.64■□□□□ 0.41
SHKBP1-223ENST00000600552 ARL4AP40617 200 aa17.64■□□□□ 0.41
SHKBP1-223ENST00000600552 SSR1P43307 286 aaKnown RBP17.64■□□□□ 0.41
SHKBP1-223ENST00000600552 RENBPP51606 427 aa17.64■□□□□ 0.41
SHKBP1-223ENST00000600552 INHBCP55103 352 aa17.64■□□□□ 0.41
SHKBP1-223ENST00000600552 LY6DQ14210 128 aa17.64■□□□□ 0.41
SHKBP1-223ENST00000600552 AFMIDQ63HM1 303 aa17.64■□□□□ 0.41
SHKBP1-223ENST00000600552 PCSK4Q6UW60 755 aa17.64■□□□□ 0.41
SHKBP1-223ENST00000600552 RAB11FIP2Q7L804 512 aa17.64■□□□□ 0.41
SHKBP1-223ENST00000600552 CCNJLQ8IV13 435 aa17.64■□□□□ 0.41
SHKBP1-223ENST00000600552 PELI3Q8N2H9 469 aa17.64■□□□□ 0.41
SHKBP1-223ENST00000600552 ZNF843Q8N446 348 aa17.64■□□□□ 0.41
SHKBP1-223ENST00000600552 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP17.64■□□□□ 0.41
SHKBP1-223ENST00000600552 CCL4L1Q8NHW4 92 aa17.64■□□□□ 0.41
SHKBP1-223ENST00000600552 CCDC97Q96F63 343 aaPredicted RBP17.64■□□□□ 0.41
SHKBP1-223ENST00000600552 NAP1L5Q96NT1 182 aaPredicted RBP17.64■□□□□ 0.41
SHKBP1-223ENST00000600552 RBM15Q96T37 977 aaKnown RBP eCLIP17.64■□□□□ 0.41
SHKBP1-223ENST00000600552 EIF3CQ99613 913 aaKnown RBP17.64■□□□□ 0.41
SHKBP1-223ENST00000600552 ETNK2Q9NVF9 386 aa17.64■□□□□ 0.41
SHKBP1-223ENST00000600552 TMEM63CQ9P1W3 806 aa17.64■□□□□ 0.41
SHKBP1-223ENST00000600552 B4GALT6Q9UBX8 382 aa17.64■□□□□ 0.41
SHKBP1-223ENST00000600552 PISDQ9UG56 409 aa17.64■□□□□ 0.41
SHKBP1-223ENST00000600552 LRP4O75096 1905 aa17.64■□□□□ 0.41
SHKBP1-223ENST00000600552 MGAQ8IWI9 3026 aa17.64■□□□□ 0.41
SHKBP1-223ENST00000600552 D6RAR5 112 aa17.63■□□□□ 0.41
SHKBP1-223ENST00000600552 NTN3O00634 580 aaPredicted RBP17.63■□□□□ 0.41
SHKBP1-223ENST00000600552 PLD2O14939 933 aa17.63■□□□□ 0.41
SHKBP1-223ENST00000600552 JMJD7P0C870 316 aa17.63■□□□□ 0.41
SHKBP1-223ENST00000600552 KRT10P13645 584 aa17.63■□□□□ 0.41
SHKBP1-223ENST00000600552 TCF4P15884 667 aa17.63■□□□□ 0.41
SHKBP1-223ENST00000600552 KELP23276 732 aa17.63■□□□□ 0.41
SHKBP1-223ENST00000600552 UGT1A5P35504 534 aa17.63■□□□□ 0.41
SHKBP1-223ENST00000600552 KIAA1024LP59773 190 aa17.63■□□□□ 0.41
SHKBP1-223ENST00000600552 MAXP61244 160 aa17.63■□□□□ 0.41
SHKBP1-223ENST00000600552 AP1S1P61966 158 aa17.63■□□□□ 0.41
SHKBP1-223ENST00000600552 RHDQ02161 417 aa17.63■□□□□ 0.41
SHKBP1-223ENST00000600552 NSUN2Q08J23 767 aaKnown RBP eCLIP17.63■□□□□ 0.41
SHKBP1-223ENST00000600552 DPYSQ14117 519 aa17.63■□□□□ 0.41
SHKBP1-223ENST00000600552 ARHGEF7Q14155 803 aa17.63■□□□□ 0.41
SHKBP1-223ENST00000600552 RFTN1Q14699 578 aaPredicted RBP17.63■□□□□ 0.41
SHKBP1-223ENST00000600552 TMCO4Q5TGY1 634 aa17.63■□□□□ 0.41
SHKBP1-223ENST00000600552 PNCKQ6P2M8 343 aa17.63■□□□□ 0.41
SHKBP1-223ENST00000600552 CCDC81Q6ZN84 652 aa17.63■□□□□ 0.41
SHKBP1-223ENST00000600552 CYP4V2Q6ZWL3 525 aaPredicted RBP17.63■□□□□ 0.41
SHKBP1-223ENST00000600552 WDR26Q9H7D7 661 aa17.63■□□□□ 0.41
SHKBP1-223ENST00000600552 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.63■□□□□ 0.41
SHKBP1-223ENST00000600552 SCINQ9Y6U3 715 aa17.63■□□□□ 0.41
SHKBP1-223ENST00000600552 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP17.62■□□□□ 0.41
SHKBP1-223ENST00000600552 CDRT15L2A8MXV6 281 aa17.62■□□□□ 0.41
SHKBP1-223ENST00000600552 ERVH48-1M5A8F1 160 aa17.62■□□□□ 0.41
SHKBP1-223ENST00000600552 CPP00450 1065 aa17.62■□□□□ 0.41
SHKBP1-223ENST00000600552 SERPINC1P01008 464 aa17.62■□□□□ 0.41
SHKBP1-223ENST00000600552 GZMAP12544 262 aa17.62■□□□□ 0.41
SHKBP1-223ENST00000600552 GM2AP17900 193 aa17.62■□□□□ 0.41
SHKBP1-223ENST00000600552 IL1R2P27930 398 aa17.62■□□□□ 0.41
SHKBP1-223ENST00000600552 SLC5A2P31639 672 aa17.62■□□□□ 0.41
SHKBP1-223ENST00000600552 ITKQ08881 620 aa17.62■□□□□ 0.41
SHKBP1-223ENST00000600552 AGERQ15109 404 aa17.62■□□□□ 0.41
SHKBP1-223ENST00000600552 PTPRRQ15256 657 aa17.62■□□□□ 0.41
SHKBP1-223ENST00000600552 AMZ1Q400G9 498 aa17.62■□□□□ 0.41
SHKBP1-223ENST00000600552 TDRD12Q587J7 1177 aaKnown RBP17.62■□□□□ 0.41
SHKBP1-223ENST00000600552 TMCO3Q6UWJ1 677 aa17.62■□□□□ 0.41
SHKBP1-223ENST00000600552 LSM14AQ8ND56 463 aaKnown RBP17.62■□□□□ 0.41
SHKBP1-223ENST00000600552 NSMCE1Q8WV22 266 aa17.62■□□□□ 0.41
SHKBP1-223ENST00000600552 ECHDC3Q96DC8 303 aa17.62■□□□□ 0.41
SHKBP1-223ENST00000600552 NUS1Q96E22 293 aa17.62■□□□□ 0.41
SHKBP1-223ENST00000600552 BTBD6Q96KE9 485 aa17.62■□□□□ 0.41
SHKBP1-223ENST00000600552 CARS2Q9HA77 564 aaKnown RBP17.62■□□□□ 0.41
SHKBP1-223ENST00000600552 NOD2Q9HC29 1040 aa17.62■□□□□ 0.41
SHKBP1-223ENST00000600552 MRPL47Q9HD33 250 aaKnown RBP17.62■□□□□ 0.41
SHKBP1-223ENST00000600552 AIPL1Q9NZN9 384 aa17.62■□□□□ 0.41
SHKBP1-223ENST00000600552 LRIT1Q9P2V4 623 aa17.62■□□□□ 0.41
SHKBP1-223ENST00000600552 DGKBQ9Y6T7 804 aa17.62■□□□□ 0.41
SHKBP1-223ENST00000600552 RNF215Q9Y6U7 377 aa17.62■□□□□ 0.41
SHKBP1-223ENST00000600552 ARHGEF17Q96PE2 2063 aaPredicted RBP17.61■□□□□ 0.41
SHKBP1-223ENST00000600552 CFAP69A5D8W1 941 aa17.61■□□□□ 0.41
SHKBP1-223ENST00000600552 TMX2-CTNND1H3BSU7 103 aa17.61■□□□□ 0.41
SHKBP1-223ENST00000600552 TRAFD1O14545 582 aaPredicted RBP17.61■□□□□ 0.41
SHKBP1-223ENST00000600552 ITGA2BP08514 1039 aa17.61■□□□□ 0.41
SHKBP1-223ENST00000600552 CTPS1P17812 591 aa17.61■□□□□ 0.41
SHKBP1-223ENST00000600552 GNPDA1P46926 289 aa17.61■□□□□ 0.41
SHKBP1-223ENST00000600552 HCAR3P49019 387 aa17.61■□□□□ 0.41
SHKBP1-223ENST00000600552 MAPK10P53779 464 aa17.61■□□□□ 0.41
SHKBP1-223ENST00000600552 CLN3Q13286 438 aa17.61■□□□□ 0.41
SHKBP1-223ENST00000600552 BIRC2Q13490 618 aa17.61■□□□□ 0.41
SHKBP1-223ENST00000600552 PHF19Q5T6S3 580 aa17.61■□□□□ 0.41
SHKBP1-223ENST00000600552 SPECC1LQ69YQ0 1117 aa17.61■□□□□ 0.41
SHKBP1-223ENST00000600552 DOK6Q6PKX4 331 aa17.61■□□□□ 0.41
SHKBP1-223ENST00000600552 IGF2-ASQ6U949 168 aa17.61■□□□□ 0.41
SHKBP1-223ENST00000600552 BBS5Q8N3I7 341 aa17.61■□□□□ 0.41
SHKBP1-223ENST00000600552 PGBD5Q8N414 524 aa17.61■□□□□ 0.41
SHKBP1-223ENST00000600552 ATPAF2Q8N5M1 289 aa17.61■□□□□ 0.41
SHKBP1-223ENST00000600552 LZTR1Q8N653 840 aa17.61■□□□□ 0.41
SHKBP1-223ENST00000600552 GPR156Q8NFN8 814 aa17.61■□□□□ 0.41
SHKBP1-223ENST00000600552 OR6C4Q8NGE1 309 aa17.61■□□□□ 0.41
SHKBP1-223ENST00000600552 FNIP1Q8TF40 1166 aa17.61■□□□□ 0.41
SHKBP1-223ENST00000600552 TRIM11Q96F44 468 aa17.61■□□□□ 0.41
SHKBP1-223ENST00000600552 LIN37Q96GY3 246 aaPredicted RBP17.61■□□□□ 0.41
SHKBP1-223ENST00000600552 TMEM74Q96NL1 305 aa17.61■□□□□ 0.41
SHKBP1-223ENST00000600552 PSKH2Q96QS6 385 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms