RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 CCZ1P86791 482 aaPredicted RBP16.18■□□□□ 0.18
TRIM28-213ENST00000598355 AP1B1Q10567 949 aa16.18■□□□□ 0.18
TRIM28-213ENST00000598355 WASHC5Q12768 1159 aa16.18■□□□□ 0.18
TRIM28-213ENST00000598355 EIF2B5Q13144 721 aaKnown RBP16.18■□□□□ 0.18
TRIM28-213ENST00000598355 PDE1CQ14123 709 aaPredicted RBP16.18■□□□□ 0.18
TRIM28-213ENST00000598355 NOMO1Q15155 1222 aa16.18■□□□□ 0.18
TRIM28-213ENST00000598355 KAZNQ674X7 775 aa16.18■□□□□ 0.18
TRIM28-213ENST00000598355 ESRP1Q6NXG1 681 aaKnown RBP16.18■□□□□ 0.18
TRIM28-213ENST00000598355 ZNF662Q6ZS27 426 aa16.18■□□□□ 0.18
TRIM28-213ENST00000598355 USP45Q70EL2 814 aa16.18■□□□□ 0.18
TRIM28-213ENST00000598355 CCDC50Q8IVM0 306 aa16.18■□□□□ 0.18
TRIM28-213ENST00000598355 SYCE1Q8N0S2 351 aa16.18■□□□□ 0.18
TRIM28-213ENST00000598355 RNF10Q8N5U6 811 aaKnown RBP16.18■□□□□ 0.18
TRIM28-213ENST00000598355 RHBDD1Q8TEB9 315 aa16.18■□□□□ 0.18
TRIM28-213ENST00000598355 SETD7Q8WTS6 366 aaKnown RBP16.18■□□□□ 0.18
TRIM28-213ENST00000598355 PDCD6IPQ8WUM4 868 aaKnown RBP16.18■□□□□ 0.18
TRIM28-213ENST00000598355 P3H4Q92791 437 aa16.18■□□□□ 0.18
TRIM28-213ENST00000598355 TBATAQ96M53 351 aa16.18■□□□□ 0.18
TRIM28-213ENST00000598355 TRIB3Q96RU7 358 aa16.18■□□□□ 0.18
TRIM28-213ENST00000598355 KLF15Q9UIH9 416 aa16.18■□□□□ 0.18
TRIM28-213ENST00000598355 ZNF106Q9H2Y7 1883 aaKnown RBP16.18■□□□□ 0.18
TRIM28-213ENST00000598355 ARHGEF17Q96PE2 2063 aaPredicted RBP16.17■□□□□ 0.18
TRIM28-213ENST00000598355 COL27A1Q8IZC6 1860 aaPredicted RBP16.17■□□□□ 0.18
TRIM28-213ENST00000598355 MIF4GDA9UHW6 222 aaKnown RBP16.17■□□□□ 0.18
TRIM28-213ENST00000598355 HACD1B0YJ81 288 aa16.17■□□□□ 0.18
TRIM28-213ENST00000598355 DDX3YO15523 660 aaKnown RBP16.17■□□□□ 0.18
TRIM28-213ENST00000598355 MTSS1O43312 755 aa16.17■□□□□ 0.18
TRIM28-213ENST00000598355 ITGAVP06756 1048 aa16.17■□□□□ 0.18
TRIM28-213ENST00000598355 FTH1P19P0C7X4 201 aa16.17■□□□□ 0.18
TRIM28-213ENST00000598355 CYP2A6P11509 494 aaPredicted RBP16.17■□□□□ 0.18
TRIM28-213ENST00000598355 CA4P22748 312 aa16.17■□□□□ 0.18
TRIM28-213ENST00000598355 DGKAP23743 735 aa16.17■□□□□ 0.18
TRIM28-213ENST00000598355 TRIM23P36406 574 aa16.17■□□□□ 0.18
TRIM28-213ENST00000598355 ITKQ08881 620 aa16.17■□□□□ 0.18
TRIM28-213ENST00000598355 XRCC4Q13426 336 aa16.17■□□□□ 0.18
TRIM28-213ENST00000598355 LLGL1Q15334 1064 aa16.17■□□□□ 0.18
TRIM28-213ENST00000598355 TEX44Q53QW1 395 aa16.17■□□□□ 0.18
TRIM28-213ENST00000598355 LRRC8AQ8IWT6 810 aa16.17■□□□□ 0.18
TRIM28-213ENST00000598355 RAVER1Q8IY67 606 aaKnown RBP16.17■□□□□ 0.18
TRIM28-213ENST00000598355 SLC25A45Q8N413 288 aa16.17■□□□□ 0.18
TRIM28-213ENST00000598355 TFB1MQ8WVM0 346 aaKnown RBP16.17■□□□□ 0.18
TRIM28-213ENST00000598355 DTD2Q96FN9 168 aa16.17■□□□□ 0.18
TRIM28-213ENST00000598355 TEKT5Q96M29 485 aa16.17■□□□□ 0.18
TRIM28-213ENST00000598355 CEP41Q9BYV8 373 aa16.17■□□□□ 0.18
TRIM28-213ENST00000598355 OSBPL8Q9BZF1 889 aa16.17■□□□□ 0.18
TRIM28-213ENST00000598355 TSGA10Q9BZW7 698 aa16.17■□□□□ 0.18
TRIM28-213ENST00000598355 SLC25A51Q9H1U9 297 aa16.17■□□□□ 0.18
TRIM28-213ENST00000598355 CAAP1Q9H8G2 361 aa16.17■□□□□ 0.18
TRIM28-213ENST00000598355 KCTD5Q9NXV2 234 aa16.17■□□□□ 0.18
TRIM28-213ENST00000598355 TTLL3Q9Y4R7 772 aa16.17■□□□□ 0.18
TRIM28-213ENST00000598355 TNFSF14O43557 240 aa16.16■□□□□ 0.18
TRIM28-213ENST00000598355 LZTS3O60299 673 aaPredicted RBP16.16■□□□□ 0.18
TRIM28-213ENST00000598355 SDC3O75056 442 aa16.16■□□□□ 0.18
TRIM28-213ENST00000598355 NEBLO76041 1014 aa16.16■□□□□ 0.18
TRIM28-213ENST00000598355 HOXC4P09017 264 aaPredicted RBP16.16■□□□□ 0.18
TRIM28-213ENST00000598355 PYGMP11217 842 aa16.16■□□□□ 0.18
TRIM28-213ENST00000598355 ZNF30P17039 623 aa16.16■□□□□ 0.18
TRIM28-213ENST00000598355 TEAD1P28347 426 aa16.16■□□□□ 0.18
TRIM28-213ENST00000598355 CD68P34810 354 aaPredicted RBP16.16■□□□□ 0.18
TRIM28-213ENST00000598355 CD86P42081 329 aa16.16■□□□□ 0.18
TRIM28-213ENST00000598355 NAP1L1P55209 391 aaKnown RBP16.16■□□□□ 0.18
TRIM28-213ENST00000598355 HNRNPKP61978 463 aaKnown RBP eCLIP16.16■□□□□ 0.18
TRIM28-213ENST00000598355 PTK2BQ14289 1009 aa16.16■□□□□ 0.18
TRIM28-213ENST00000598355 NFATC4Q14934 902 aa16.16■□□□□ 0.18
TRIM28-213ENST00000598355 PTPRRQ15256 657 aa16.16■□□□□ 0.18
TRIM28-213ENST00000598355 PEX26Q7Z412 305 aa16.16■□□□□ 0.18
TRIM28-213ENST00000598355 TECPR1Q7Z6L1 1165 aa16.16■□□□□ 0.18
TRIM28-213ENST00000598355 RAB44Q7Z6P3 723 aaPredicted RBP16.16■□□□□ 0.18
TRIM28-213ENST00000598355 TSPAN33Q86UF1 283 aa16.16■□□□□ 0.18
TRIM28-213ENST00000598355 PELI3Q8N2H9 469 aa16.16■□□□□ 0.18
TRIM28-213ENST00000598355 PLA2G15Q8NCC3 412 aa16.16■□□□□ 0.18
TRIM28-213ENST00000598355 ZNF548Q8NEK5 533 aaPredicted RBP16.16■□□□□ 0.18
TRIM28-213ENST00000598355 OR4C6Q8NH72 309 aa16.16■□□□□ 0.18
TRIM28-213ENST00000598355 UBE2Q2Q8WVN8 375 aa16.16■□□□□ 0.18
TRIM28-213ENST00000598355 ADAMTS14Q8WXS8 1223 aa16.16■□□□□ 0.18
TRIM28-213ENST00000598355 HES6Q96HZ4 224 aa16.16■□□□□ 0.18
TRIM28-213ENST00000598355 VAT1Q99536 393 aa16.16■□□□□ 0.18
TRIM28-213ENST00000598355 GRPEL1Q9HAV7 217 aa16.16■□□□□ 0.18
TRIM28-213ENST00000598355 PCDH9Q9HC56 1237 aa16.16■□□□□ 0.18
TRIM28-213ENST00000598355 UCKL1Q9NWZ5 548 aa16.16■□□□□ 0.18
TRIM28-213ENST00000598355 AMFRQ9UKV5 643 aa16.16■□□□□ 0.18
TRIM28-213ENST00000598355 DNPEPQ9ULA0 475 aa16.16■□□□□ 0.18
TRIM28-213ENST00000598355 CHKBQ9Y259 395 aa16.16■□□□□ 0.18
TRIM28-213ENST00000598355 KNTC1P50748 2209 aa16.16■□□□□ 0.18
TRIM28-213ENST00000598355 ASXL3Q9C0F0 2248 aa16.16■□□□□ 0.18
TRIM28-213ENST00000598355 TRIM16O95361 564 aa16.15■□□□□ 0.18
TRIM28-213ENST00000598355 ALPIP09923 528 aa16.15■□□□□ 0.18
TRIM28-213ENST00000598355 HNF1BP35680 557 aa16.15■□□□□ 0.18
TRIM28-213ENST00000598355 THOP1P52888 689 aa16.15■□□□□ 0.18
TRIM28-213ENST00000598355 KIAA1024LP59773 190 aa16.15■□□□□ 0.18
TRIM28-213ENST00000598355 DPTQ07507 201 aa16.15■□□□□ 0.18
TRIM28-213ENST00000598355 KLF1Q13351 362 aaPredicted RBP16.15■□□□□ 0.18
TRIM28-213ENST00000598355 INPP5AQ14642 412 aa16.15■□□□□ 0.18
TRIM28-213ENST00000598355 CDKN3Q16667 212 aa16.15■□□□□ 0.18
TRIM28-213ENST00000598355 PROX2Q3B8N5 592 aa16.15■□□□□ 0.18
TRIM28-213ENST00000598355 LRRC66Q68CR7 880 aa16.15■□□□□ 0.18
TRIM28-213ENST00000598355 CRTC1Q6UUV9 634 aa16.15■□□□□ 0.18
TRIM28-213ENST00000598355 B4GALNT4Q76KP1 1039 aa16.15■□□□□ 0.18
TRIM28-213ENST00000598355 HSD11B1LQ7Z5J1 315 aa16.15■□□□□ 0.18
TRIM28-213ENST00000598355 SLCO6A1Q86UG4 719 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms