RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 OR13C4Q8NGS5 318 aa14.22□□□□□ -0.13
LIG3-205ENST00000585941 SKA1Q96BD8 255 aa14.22□□□□□ -0.13
LIG3-205ENST00000585941 NSMCE3Q96MG7 304 aa14.22□□□□□ -0.13
LIG3-205ENST00000585941 C17orf80Q9BSJ5 609 aa14.22□□□□□ -0.13
LIG3-205ENST00000585941 TDP1Q9NUW8 608 aa14.22□□□□□ -0.13
LIG3-205ENST00000585941 HCFC1R1Q9NWW0 138 aa14.22□□□□□ -0.13
LIG3-205ENST00000585941 FCF1Q9Y324 198 aaKnown RBP14.22□□□□□ -0.13
LIG3-205ENST00000585941 SPO11Q9Y5K1 396 aa14.22□□□□□ -0.13
LIG3-205ENST00000585941 TARM1B6A8C7 271 aa14.21□□□□□ -0.13
LIG3-205ENST00000585941 FZD6O60353 706 aa14.21□□□□□ -0.13
LIG3-205ENST00000585941 CCDC22O60826 627 aa14.21□□□□□ -0.13
LIG3-205ENST00000585941 CLASP2O75122 1294 aaKnown RBP14.21□□□□□ -0.13
LIG3-205ENST00000585941 SOCS5O75159 536 aa14.21□□□□□ -0.13
LIG3-205ENST00000585941 IGSF6O95976 241 aa14.21□□□□□ -0.13
LIG3-205ENST00000585941 PDHA1P08559 390 aa14.21□□□□□ -0.13
LIG3-205ENST00000585941 RBP1P09455 135 aa14.21□□□□□ -0.13
LIG3-205ENST00000585941 LTA4HP09960 611 aaKnown RBP14.21□□□□□ -0.13
LIG3-205ENST00000585941 PIRTP0C851 137 aa14.21□□□□□ -0.13
LIG3-205ENST00000585941 STC1P52823 247 aa14.21□□□□□ -0.13
LIG3-205ENST00000585941 RBM20Q5T481 1227 aaKnown RBP14.21□□□□□ -0.13
LIG3-205ENST00000585941 ARMC12Q5T9G4 340 aa14.21□□□□□ -0.13
LIG3-205ENST00000585941 TPGS1Q6ZTW0 290 aa14.21□□□□□ -0.13
LIG3-205ENST00000585941 RNF135Q8IUD6 432 aa14.21□□□□□ -0.13
LIG3-205ENST00000585941 APCDD1Q8J025 514 aa14.21□□□□□ -0.13
LIG3-205ENST00000585941 TMEM151AQ8N4L1 468 aa14.21□□□□□ -0.13
LIG3-205ENST00000585941 OR4K2Q8NGD2 314 aa14.21□□□□□ -0.13
LIG3-205ENST00000585941 BHMTQ93088 406 aa14.21□□□□□ -0.13
LIG3-205ENST00000585941 ISG20Q96AZ6 181 aaKnown RBP14.21□□□□□ -0.13
LIG3-205ENST00000585941 NXNL1Q96CM4 212 aa14.21□□□□□ -0.13
LIG3-205ENST00000585941 KLHL29Q96CT2 875 aa14.21□□□□□ -0.13
LIG3-205ENST00000585941 OTUB2Q96DC9 234 aa14.21□□□□□ -0.13
LIG3-205ENST00000585941 GPR78Q96P69 363 aa14.21□□□□□ -0.13
LIG3-205ENST00000585941 C20orf27Q9GZN8 174 aa14.21□□□□□ -0.13
LIG3-205ENST00000585941 MAGEE1Q9HCI5 957 aa14.21□□□□□ -0.13
LIG3-205ENST00000585941 GPAMQ9HCL2 828 aa14.21□□□□□ -0.13
LIG3-205ENST00000585941 MARCH4Q9P2E8 410 aaPredicted RBP14.21□□□□□ -0.13
LIG3-205ENST00000585941 SORCS3Q9UPU3 1222 aa14.21□□□□□ -0.13
LIG3-205ENST00000585941 DNAJC16Q9Y2G8 782 aa14.21□□□□□ -0.13
LIG3-205ENST00000585941 DOCK6Q96HP0 2047 aa14.21□□□□□ -0.14
LIG3-205ENST00000585941 H7C0S8 307 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 TRAFD1O14545 582 aaPredicted RBP14.2□□□□□ -0.14
LIG3-205ENST00000585941 AURKAO14965 403 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 STX7O15400 261 aaKnown RBP14.2□□□□□ -0.14
LIG3-205ENST00000585941 ITM2AO43736 263 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 MOSPD3O75425 235 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 RFPL2O75678 378 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 HSPA4LO95757 839 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 SERPINB5P36952 375 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 AQP5P55064 265 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 BCL2L1Q07817 233 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 DMC1Q14565 340 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 ACAP2Q15057 778 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 TEAD2Q15562 447 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 TBCCQ15814 346 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 ZNF789Q5FWF6 425 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 AARS2Q5JTZ9 985 aaKnown RBP14.2□□□□□ -0.14
LIG3-205ENST00000585941 KIAA1958Q8N8K9 716 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 MDGA1Q8NFP4 955 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 PDCD6IPQ8WUM4 868 aaKnown RBP14.2□□□□□ -0.14
LIG3-205ENST00000585941 INPP5DQ92835 1189 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 MYO19Q96H55 970 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 UBXN10Q96LJ8 280 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 OLFM1Q99784 485 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 HTATIP2Q9BUP3 242 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 MCOLN1Q9GZU1 580 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 ATP13A3Q9H7F0 1226 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 SUDS3Q9H7L9 328 aaPredicted RBP14.2□□□□□ -0.14
LIG3-205ENST00000585941 PCDH10Q9P2E7 1040 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 CPSF2Q9P2I0 782 aaKnown RBP14.2□□□□□ -0.14
LIG3-205ENST00000585941 OR51F1A6NGY5 319 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 TK2O00142 265 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 CCL22O00626 93 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 SLC9A3R1O14745 358 aaPredicted RBP14.2□□□□□ -0.14
LIG3-205ENST00000585941 HGSO14964 777 aaPredicted RBP14.2□□□□□ -0.14
LIG3-205ENST00000585941 GRM6O15303 877 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 PGLSO95336 258 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 MT-CO1P00395 513 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 PENKP01210 267 aaPredicted RBP14.2□□□□□ -0.14
LIG3-205ENST00000585941 ALOX15P16050 662 aaPredicted RBP14.2□□□□□ -0.14
LIG3-205ENST00000585941 FDXRP22570 491 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 SERPINB3P29508 390 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 GMPRP36959 345 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 TTPAP49638 278 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 SUOXP51687 545 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 DNAJB13P59910 316 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 SULT2A1Q06520 285 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 KRT72Q14CN4 511 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 ASRGL1Q7L266 308 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 TTC30BQ8N4P2 665 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 HEXDCQ8WVB3 486 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 TCEAL4Q96EI5 215 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 LMLNQ96KR4 655 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 SORT1Q99523 831 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 NDNQ99608 321 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 DRC3Q9H069 523 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 CCDC68Q9H2F9 335 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 ZNF395Q9H8N7 513 aaPredicted RBP14.2□□□□□ -0.14
LIG3-205ENST00000585941 IGSF5Q9NSI5 407 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 DNAJC28Q9NX36 388 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 PLK2Q9NYY3 685 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms