RNA–Protein interactions for RNA: ENST00000585847.5

VMP1-202, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-202ENST00000585847 SDE2Q6IQ49 451 aa12.71□□□□□ -0.37
VMP1-202ENST00000585847 KDELC1Q6UW63 502 aa12.71□□□□□ -0.37
VMP1-202ENST00000585847 C3orf62Q6ZUJ4 267 aa12.71□□□□□ -0.37
VMP1-202ENST00000585847 TMEM135Q86UB9 458 aa12.71□□□□□ -0.37
VMP1-202ENST00000585847 C1orf210Q8IVY1 113 aa12.71□□□□□ -0.37
VMP1-202ENST00000585847 NDUFAF2Q8N183 169 aa12.71□□□□□ -0.37
VMP1-202ENST00000585847 MDGA1Q8NFP4 955 aa12.71□□□□□ -0.37
VMP1-202ENST00000585847 ARRDC2Q8TBH0 407 aa12.71□□□□□ -0.37
VMP1-202ENST00000585847 RMDN1Q96DB5 314 aa12.71□□□□□ -0.37
VMP1-202ENST00000585847 IFT43Q96FT9 208 aa12.71□□□□□ -0.37
VMP1-202ENST00000585847 LRIG1Q96JA1 1093 aa12.71□□□□□ -0.37
VMP1-202ENST00000585847 MRGPRX1Q96LB2 322 aa12.71□□□□□ -0.37
VMP1-202ENST00000585847 ATP6V1G3Q96LB4 118 aa12.71□□□□□ -0.37
VMP1-202ENST00000585847 GORASP1Q9BQQ3 440 aa12.71□□□□□ -0.37
VMP1-202ENST00000585847 KIFC1Q9BW19 673 aa12.71□□□□□ -0.37
VMP1-202ENST00000585847 TRABDQ9H4I3 376 aa12.71□□□□□ -0.37
VMP1-202ENST00000585847 PSMC3IPQ9P2W1 217 aaPredicted RBP12.71□□□□□ -0.37
VMP1-202ENST00000585847 EBF1Q9UH73 591 aa12.71□□□□□ -0.37
VMP1-202ENST00000585847 EVLQ9UI08 416 aaPredicted RBP12.71□□□□□ -0.37
VMP1-202ENST00000585847 PPM1HQ9ULR3 514 aa12.71□□□□□ -0.37
VMP1-202ENST00000585847 FRYLO94915 3013 aa12.7□□□□□ -0.38
VMP1-202ENST00000585847 DMXL1Q9Y485 3027 aa12.7□□□□□ -0.38
VMP1-202ENST00000585847 AGPSO00116 658 aa12.7□□□□□ -0.38
VMP1-202ENST00000585847 RGS16O15492 202 aaPredicted RBP12.7□□□□□ -0.38
VMP1-202ENST00000585847 BNIP3LO60238 219 aa12.7□□□□□ -0.38
VMP1-202ENST00000585847 NDST3O95803 873 aa12.7□□□□□ -0.38
VMP1-202ENST00000585847 SP9P0CG40 484 aa12.7□□□□□ -0.38
VMP1-202ENST00000585847 ADRA1DP25100 572 aa12.7□□□□□ -0.38
VMP1-202ENST00000585847 HOXA6P31267 233 aa12.7□□□□□ -0.38
VMP1-202ENST00000585847 PXNP49023 591 aaPredicted RBP12.7□□□□□ -0.38
VMP1-202ENST00000585847 SERPINB9P50453 376 aa12.7□□□□□ -0.38
VMP1-202ENST00000585847 DGKEP52429 567 aa12.7□□□□□ -0.38
VMP1-202ENST00000585847 SNRPD1P62314 119 aaKnown RBP12.7□□□□□ -0.38
VMP1-202ENST00000585847 SKOR1P84550 965 aa12.7□□□□□ -0.38
VMP1-202ENST00000585847 DSC2Q02487 901 aa12.7□□□□□ -0.38
VMP1-202ENST00000585847 CDK18Q07002 472 aa12.7□□□□□ -0.38
VMP1-202ENST00000585847 ITKQ08881 620 aa12.7□□□□□ -0.38
VMP1-202ENST00000585847 DNAJC3Q13217 504 aa12.7□□□□□ -0.38
VMP1-202ENST00000585847 PUM1Q14671 1186 aaKnown RBP eCLIP12.7□□□□□ -0.38
VMP1-202ENST00000585847 MYLK3Q32MK0 819 aa12.7□□□□□ -0.38
VMP1-202ENST00000585847 CASC4Q6P4E1 433 aa12.7□□□□□ -0.38
VMP1-202ENST00000585847 NCEH1Q6PIU2 408 aa12.7□□□□□ -0.38
VMP1-202ENST00000585847 SRLQ86TD4 932 aa12.7□□□□□ -0.38
VMP1-202ENST00000585847 PRPF39Q86UA1 669 aaKnown RBP12.7□□□□□ -0.38
VMP1-202ENST00000585847 LRRC6Q86X45 466 aa12.7□□□□□ -0.38
VMP1-202ENST00000585847 TMPRSS6Q8IU80 811 aa12.7□□□□□ -0.38
VMP1-202ENST00000585847 IPMKQ8NFU5 416 aa12.7□□□□□ -0.38
VMP1-202ENST00000585847 NELL1Q92832 810 aa12.7□□□□□ -0.38
VMP1-202ENST00000585847 ARRDC3Q96B67 414 aa12.7□□□□□ -0.38
VMP1-202ENST00000585847 MTBPQ96DY7 904 aa12.7□□□□□ -0.38
VMP1-202ENST00000585847 MRGPRX2Q96LB1 330 aa12.7□□□□□ -0.38
VMP1-202ENST00000585847 C9orf72Q96LT7 481 aa12.7□□□□□ -0.38
VMP1-202ENST00000585847 SEMA3CQ99985 751 aa12.7□□□□□ -0.38
VMP1-202ENST00000585847 SCUBE2Q9NQ36 999 aa12.7□□□□□ -0.38
VMP1-202ENST00000585847 VPS18Q9P253 973 aa12.7□□□□□ -0.38
VMP1-202ENST00000585847 HECAQ9UBI9 543 aaPredicted RBP12.7□□□□□ -0.38
VMP1-202ENST00000585847 SOX13Q9UN79 622 aa12.7□□□□□ -0.38
VMP1-202ENST00000585847 CHMP2BQ9UQN3 213 aa12.7□□□□□ -0.38
VMP1-202ENST00000585847 MAD1L1Q9Y6D9 718 aa12.7□□□□□ -0.38
VMP1-202ENST00000585847 EP300Q09472 2414 aaPredicted RBP12.7□□□□□ -0.38
VMP1-202ENST00000585847 TCRBV9S1A1TA0A576 114 aa12.69□□□□□ -0.38
VMP1-202ENST00000585847 PLK4O00444 970 aa12.69□□□□□ -0.38
VMP1-202ENST00000585847 SYNCRIPO60506 623 aaKnown RBP12.69□□□□□ -0.38
VMP1-202ENST00000585847 LEFTY1O75610 366 aa12.69□□□□□ -0.38
VMP1-202ENST00000585847 DRD3P35462 400 aa12.69□□□□□ -0.38
VMP1-202ENST00000585847 CD86P42081 329 aa12.69□□□□□ -0.38
VMP1-202ENST00000585847 GRIA4P48058 902 aa12.69□□□□□ -0.38
VMP1-202ENST00000585847 FAM193AP78312 1265 aa12.69□□□□□ -0.38
VMP1-202ENST00000585847 ELAVL3Q14576 367 aaKnown RBP12.69□□□□□ -0.38
VMP1-202ENST00000585847 STARD3Q14849 445 aa12.69□□□□□ -0.38
VMP1-202ENST00000585847 CRYMQ14894 314 aa12.69□□□□□ -0.38
VMP1-202ENST00000585847 UGP2Q16851 508 aa12.69□□□□□ -0.38
VMP1-202ENST00000585847 ARSIQ5FYB1 569 aa12.69□□□□□ -0.38
VMP1-202ENST00000585847 ANO7Q6IWH7 933 aa12.69□□□□□ -0.38
VMP1-202ENST00000585847 ZSWIM9Q86XI8 627 aa12.69□□□□□ -0.38
VMP1-202ENST00000585847 MMAAQ8IVH4 418 aaKnown RBP12.69□□□□□ -0.38
VMP1-202ENST00000585847 CAMKK1Q8N5S9 505 aa12.69□□□□□ -0.38
VMP1-202ENST00000585847 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.69□□□□□ -0.38
VMP1-202ENST00000585847 TSTD1Q8NFU3 115 aa12.69□□□□□ -0.38
VMP1-202ENST00000585847 PIP4K2CQ8TBX8 421 aa12.69□□□□□ -0.38
VMP1-202ENST00000585847 CALML6Q8TD86 181 aa12.69□□□□□ -0.38
VMP1-202ENST00000585847 HCAR2Q8TDS4 363 aa12.69□□□□□ -0.38
VMP1-202ENST00000585847 OR8D1Q8WZ84 308 aa12.69□□□□□ -0.38
VMP1-202ENST00000585847 FAM131CQ96AQ9 280 aa12.69□□□□□ -0.38
VMP1-202ENST00000585847 ALKBH8Q96BT7 664 aaKnown RBP12.69□□□□□ -0.38
VMP1-202ENST00000585847 ZNF641Q96N77 438 aaPredicted RBP12.69□□□□□ -0.38
VMP1-202ENST00000585847 HEPHQ9BQS7 1158 aa12.69□□□□□ -0.38
VMP1-202ENST00000585847 DHRS4Q9BTZ2 278 aa12.69□□□□□ -0.38
VMP1-202ENST00000585847 FICDQ9BVA6 458 aa12.69□□□□□ -0.38
VMP1-202ENST00000585847 TDRD1Q9BXT4 1180 aaKnown RBP12.69□□□□□ -0.38
VMP1-202ENST00000585847 ATP13A3Q9H7F0 1226 aa12.69□□□□□ -0.38
VMP1-202ENST00000585847 CNOT10Q9H9A5 744 aaKnown RBP12.69□□□□□ -0.38
VMP1-202ENST00000585847 FBRSQ9HAH7 460 aa12.69□□□□□ -0.38
VMP1-202ENST00000585847 TMBIM4Q9HC24 238 aa12.69□□□□□ -0.38
VMP1-202ENST00000585847 NOD2Q9HC29 1040 aa12.69□□□□□ -0.38
VMP1-202ENST00000585847 POLMQ9NP87 494 aaPredicted RBP12.69□□□□□ -0.38
VMP1-202ENST00000585847 SERGEFQ9UGK8 458 aa12.69□□□□□ -0.38
VMP1-202ENST00000585847 DOCK9Q9BZ29 2069 aa12.69□□□□□ -0.38
VMP1-202ENST00000585847 IQANK1A0A1B0GTG1 560 aa12.68□□□□□ -0.38
VMP1-202ENST00000585847 MED19A0JLT2 244 aaPredicted RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms