RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 LPOP22079 712 aaPredicted RBP10.77□□□□□ -0.69
SS18-213ENST00000579640 VIPR1P32241 457 aa10.77□□□□□ -0.69
SS18-213ENST00000579640 HMGCLP35914 325 aa10.77□□□□□ -0.69
SS18-213ENST00000579640 ABL2P42684 1182 aa10.77□□□□□ -0.69
SS18-213ENST00000579640 ARHGEF7Q14155 803 aa10.77□□□□□ -0.69
SS18-213ENST00000579640 SKIDA1Q1XH10 827 aa10.77□□□□□ -0.69
SS18-213ENST00000579640 ANKRD20A4Q4UJ75 823 aa10.77□□□□□ -0.69
SS18-213ENST00000579640 TSTD2Q5T7W7 516 aa10.77□□□□□ -0.69
SS18-213ENST00000579640 TMEM92Q6UXU6 159 aa10.77□□□□□ -0.69
SS18-213ENST00000579640 UNC5AQ6ZN44 842 aa10.77□□□□□ -0.69
SS18-213ENST00000579640 TRIM67Q6ZTA4 783 aa10.77□□□□□ -0.69
SS18-213ENST00000579640 CYS1Q717R9 158 aa10.77□□□□□ -0.69
SS18-213ENST00000579640 DPPA4Q7L190 304 aa10.77□□□□□ -0.69
SS18-213ENST00000579640 KBTBD6Q86V97 674 aa10.77□□□□□ -0.69
SS18-213ENST00000579640 RAVER1Q8IY67 606 aaKnown RBP10.77□□□□□ -0.69
SS18-213ENST00000579640 SPEM1Q8N4L4 309 aa10.77□□□□□ -0.69
SS18-213ENST00000579640 TTC30BQ8N4P2 665 aa10.77□□□□□ -0.69
SS18-213ENST00000579640 MDGA1Q8NFP4 955 aa10.77□□□□□ -0.69
SS18-213ENST00000579640 UBLCP1Q8WVY7 318 aaPredicted RBP10.77□□□□□ -0.69
SS18-213ENST00000579640 ZNF669Q96BR6 464 aaPredicted RBP10.77□□□□□ -0.69
SS18-213ENST00000579640 SIPA1Q96FS4 1042 aa10.77□□□□□ -0.69
SS18-213ENST00000579640 CFAP36Q96G28 342 aa10.77□□□□□ -0.69
SS18-213ENST00000579640 FUT8Q9BYC5 575 aa10.77□□□□□ -0.69
SS18-213ENST00000579640 GPR63Q9BZJ6 419 aa10.77□□□□□ -0.69
SS18-213ENST00000579640 MKRN2Q9H000 416 aaKnown RBP10.77□□□□□ -0.69
SS18-213ENST00000579640 MFSD1Q9H3U5 465 aa10.77□□□□□ -0.69
SS18-213ENST00000579640 VPS37BQ9H9H4 285 aa10.77□□□□□ -0.69
SS18-213ENST00000579640 ZFYVE1Q9HBF4 777 aa10.77□□□□□ -0.69
SS18-213ENST00000579640 PCDH12Q9NPG4 1184 aa10.77□□□□□ -0.69
SS18-213ENST00000579640 CHRAC1Q9NRG0 131 aa10.77□□□□□ -0.69
SS18-213ENST00000579640 B4GALT6Q9UBX8 382 aa10.77□□□□□ -0.69
SS18-213ENST00000579640 SIT1Q9Y3P8 196 aa10.77□□□□□ -0.69
SS18-213ENST00000579640 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.77□□□□□ -0.69
SS18-213ENST00000579640 FAM169AQ9Y6X4 670 aa10.77□□□□□ -0.69
SS18-213ENST00000579640 COL6A3P12111 3177 aa10.76□□□□□ -0.69
SS18-213ENST00000579640 A0A087WUV0 522 aaPredicted RBP10.76□□□□□ -0.69
SS18-213ENST00000579640 C1orf232A0A0U1RR37 186 aa10.76□□□□□ -0.69
SS18-213ENST00000579640 TCRBV21S2A2A0A5A6 115 aa10.76□□□□□ -0.69
SS18-213ENST00000579640 NPIPB15A6NHN6 443 aaPredicted RBP10.76□□□□□ -0.69
SS18-213ENST00000579640 H0Y858 1186 aa10.76□□□□□ -0.69
SS18-213ENST00000579640 PSMD11O00231 422 aa10.76□□□□□ -0.69
SS18-213ENST00000579640 AP1G1O43747 822 aa10.76□□□□□ -0.69
SS18-213ENST00000579640 ALDH1A2O94788 518 aa10.76□□□□□ -0.69
SS18-213ENST00000579640 ACSL3O95573 720 aa10.76□□□□□ -0.69
SS18-213ENST00000579640 PRKCGP05129 697 aa10.76□□□□□ -0.69
SS18-213ENST00000579640 PSMA3P25788 255 aa10.76□□□□□ -0.69
SS18-213ENST00000579640 STX2P32856 288 aa10.76□□□□□ -0.69
SS18-213ENST00000579640 HSD17B3P37058 310 aa10.76□□□□□ -0.69
SS18-213ENST00000579640 MMP12P39900 470 aa10.76□□□□□ -0.69
SS18-213ENST00000579640 FAM193AP78312 1265 aa10.76□□□□□ -0.69
SS18-213ENST00000579640 ACVR1Q04771 509 aa10.76□□□□□ -0.69
SS18-213ENST00000579640 CNTN1Q12860 1018 aa10.76□□□□□ -0.69
SS18-213ENST00000579640 CRYMQ14894 314 aa10.76□□□□□ -0.69
SS18-213ENST00000579640 CDKN3Q16667 212 aa10.76□□□□□ -0.69
SS18-213ENST00000579640 POM121L1PQ3SYA9 428 aa10.76□□□□□ -0.69
SS18-213ENST00000579640 KIAA0930Q6ICG6 404 aaPredicted RBP10.76□□□□□ -0.69
SS18-213ENST00000579640 ZNF449Q6P9G9 518 aa10.76□□□□□ -0.69
SS18-213ENST00000579640 CRTC1Q6UUV9 634 aa10.76□□□□□ -0.69
SS18-213ENST00000579640 C3orf62Q6ZUJ4 267 aa10.76□□□□□ -0.69
SS18-213ENST00000579640 USP30Q70CQ3 517 aa10.76□□□□□ -0.69
SS18-213ENST00000579640 LYSMD3Q7Z3D4 306 aa10.76□□□□□ -0.69
SS18-213ENST00000579640 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.76□□□□□ -0.69
SS18-213ENST00000579640 FAM131CQ96AQ9 280 aa10.76□□□□□ -0.69
SS18-213ENST00000579640 OMDQ99983 421 aa10.76□□□□□ -0.69
SS18-213ENST00000579640 TREX1Q9NSU2 369 aa10.76□□□□□ -0.69
SS18-213ENST00000579640 NCKAP1Q9Y2A7 1128 aa10.76□□□□□ -0.69
SS18-213ENST00000579640 PKP3Q9Y446 797 aa10.76□□□□□ -0.69
SS18-213ENST00000579640 MYLKQ15746 1914 aa10.76□□□□□ -0.69
SS18-213ENST00000579640 ZCWPW2A0A1B0GU75 182 aa10.75□□□□□ -0.69
SS18-213ENST00000579640 AREL1O15033 823 aa10.75□□□□□ -0.69
SS18-213ENST00000579640 STX7O15400 261 aaKnown RBP10.75□□□□□ -0.69
SS18-213ENST00000579640 ACADMP11310 421 aa10.75□□□□□ -0.69
SS18-213ENST00000579640 NMBRP28336 390 aa10.75□□□□□ -0.69
SS18-213ENST00000579640 SSTR1P30872 391 aa10.75□□□□□ -0.69
SS18-213ENST00000579640 DRD3P35462 400 aa10.75□□□□□ -0.69
SS18-213ENST00000579640 HADHAP40939 763 aa10.75□□□□□ -0.69
SS18-213ENST00000579640 P2RY2P41231 377 aa10.75□□□□□ -0.69
SS18-213ENST00000579640 ZNF140P52738 457 aaPredicted RBP10.75□□□□□ -0.69
SS18-213ENST00000579640 METAP1P53582 386 aa10.75□□□□□ -0.69
SS18-213ENST00000579640 GPX6P59796 221 aa10.75□□□□□ -0.69
SS18-213ENST00000579640 GAS6Q14393 721 aa10.75□□□□□ -0.69
SS18-213ENST00000579640 UAP1Q16222 522 aaPredicted RBP10.75□□□□□ -0.69
SS18-213ENST00000579640 TMEM52BQ4KMG9 183 aa10.75□□□□□ -0.69
SS18-213ENST00000579640 PIP5KL1Q5T9C9 394 aa10.75□□□□□ -0.69
SS18-213ENST00000579640 ZDHHC20Q5W0Z9 365 aa10.75□□□□□ -0.69
SS18-213ENST00000579640 LRRC66Q68CR7 880 aa10.75□□□□□ -0.69
SS18-213ENST00000579640 HDXQ7Z353 690 aa10.75□□□□□ -0.69
SS18-213ENST00000579640 HDDC3Q8N4P3 179 aa10.75□□□□□ -0.69
SS18-213ENST00000579640 AADATQ8N5Z0 425 aa10.75□□□□□ -0.69
SS18-213ENST00000579640 TSTD1Q8NFU3 115 aa10.75□□□□□ -0.69
SS18-213ENST00000579640 GABPB2Q8TAK5 448 aaPredicted RBP10.75□□□□□ -0.69
SS18-213ENST00000579640 PBXIP1Q96AQ6 731 aa10.75□□□□□ -0.69
SS18-213ENST00000579640 MFSD3Q96ES6 412 aa10.75□□□□□ -0.69
SS18-213ENST00000579640 MRGPRX1Q96LB2 322 aa10.75□□□□□ -0.69
SS18-213ENST00000579640 SMIM14Q96QK8 99 aa10.75□□□□□ -0.69
SS18-213ENST00000579640 EPB41L4BQ9H329 900 aa10.75□□□□□ -0.69
SS18-213ENST00000579640 RAD18Q9NS91 495 aa10.75□□□□□ -0.69
SS18-213ENST00000579640 NLE1Q9NVX2 485 aaPredicted RBP10.75□□□□□ -0.69
SS18-213ENST00000579640 FBXL12Q9NXK8 326 aa10.75□□□□□ -0.69
SS18-213ENST00000579640 IL17CQ9P0M4 197 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms