RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 OXTRP30559 389 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 VIPR1P32241 457 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 CA5AP35218 305 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 LIG3P49916 1009 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 CCR5P51681 352 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 SUOXP51687 545 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 STC1P52823 247 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 SLC7A5Q01650 507 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 CKAP4Q07065 602 aaKnown RBP9.31□□□□□ -0.92
VPS35-211ENST00000569950 PTPRCAPQ14761 206 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 MSS51Q4VC12 460 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 USP39Q53GS9 565 aaKnown RBP9.31□□□□□ -0.92
VPS35-211ENST00000569950 LRRC66Q68CR7 880 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 HIBCHQ6NVY1 386 aaPredicted RBP9.31□□□□□ -0.92
VPS35-211ENST00000569950 FBXL19Q6PCT2 694 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 C4orf22Q6V702 233 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 SYDE1Q6ZW31 735 aaPredicted RBP9.31□□□□□ -0.92
VPS35-211ENST00000569950 GSTA5Q7RTV2 222 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 LYSMD3Q7Z3D4 306 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 TMC3Q7Z5M5 1100 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 HORMAD1Q86X24 394 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 SLC25A41Q8N5S1 370 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 DEFB119Q8N690 84 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 SUMF1Q8NBK3 374 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 TMEM145Q8NBT3 493 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 OR52K1Q8NGK4 314 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 OR14C36Q8NHC7 312 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 GRK7Q8WTQ7 553 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 HINFPQ9BQA5 517 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 FERMT1Q9BQL6 677 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 WRAP53Q9BUR4 548 aaKnown RBP9.31□□□□□ -0.92
VPS35-211ENST00000569950 BTBD1Q9H0C5 482 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 KDM4CQ9H3R0 1056 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 LRRC40Q9H9A6 602 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 MAGEE1Q9HCI5 957 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 PREBQ9HCU5 417 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 RAPGEFL1Q9UHV5 662 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 COQ6Q9Y2Z9 468 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 AAR2Q9Y312 384 aaKnown RBP9.31□□□□□ -0.92
VPS35-211ENST00000569950 PIKFYVEQ9Y2I7 2098 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 PIEZO1Q92508 2521 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 CEP250Q9BV73 2442 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 A0A1W2PQU0 124 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 CTAGE15A4D2H0 777 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 IGLON5A6NGN9 336 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 MROH6A6NGR9 719 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 K7ESM1 405 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 TSPAN6O43657 245 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 MMP20O60882 483 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 RNGTTO60942 597 aaKnown RBP9.3□□□□□ -0.92
VPS35-211ENST00000569950 AVILO75366 819 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 NEBLO76041 1014 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 CLDN7O95471 211 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 CTAGE8P0CG41 777 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 C6P13671 934 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 TPH1P17752 444 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 ZNF140P52738 457 aaPredicted RBP9.3□□□□□ -0.92
VPS35-211ENST00000569950 FAM193AP78312 1265 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 BASP1P80723 227 aaKnown RBP9.3□□□□□ -0.92
VPS35-211ENST00000569950 BNC1Q01954 994 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 MTM1Q13496 603 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 PPP1R7Q15435 360 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 TPRG1LQ5T0D9 272 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 CERCAMQ5T4B2 595 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 PEAR1Q5VY43 1037 aaPredicted RBP9.3□□□□□ -0.92
VPS35-211ENST00000569950 KIAA0895LQ68EN5 471 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 NEK5Q6P3R8 708 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 CTAGE6Q86UF2 777 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 CTAGE4Q8IX94 777 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 TMEFF1Q8IYR6 380 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 MPP5Q8N3R9 675 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 TP53I13Q8NBR0 393 aaPredicted RBP9.3□□□□□ -0.92
VPS35-211ENST00000569950 MCUQ8NE86 351 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 CADM4Q8NFZ8 388 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 ASB12Q8WXK4 309 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 DNASE2BQ8WZ79 361 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 CENPTQ96BT3 561 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 SIGLEC10Q96LC7 697 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 ZNF778Q96MU6 729 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 RUNDC3BQ96NL0 473 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 TRIM56Q9BRZ2 755 aaKnown RBP9.3□□□□□ -0.92
VPS35-211ENST00000569950 PCED1AQ9H1Q7 454 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 EPC1Q9H2F5 836 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 CAAP1Q9H8G2 361 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 GPR27Q9NS67 375 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 ZDHHC18Q9NUE0 388 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 TMEM74BQ9NUR3 256 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 IL17CQ9P0M4 197 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 FEZ2Q9UHY8 353 aaPredicted RBP9.3□□□□□ -0.92
VPS35-211ENST00000569950 TMPRSS11EQ9UL52 423 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 TPX2Q9ULW0 747 aaKnown RBP9.3□□□□□ -0.92
VPS35-211ENST00000569950 SHOC2Q9UQ13 582 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 CA5BQ9Y2D0 317 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 SNX24Q9Y343 169 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 ZNF711Q9Y462 761 aa9.3□□□□□ -0.92
VPS35-211ENST00000569950 TDRD6O60522 2096 aaKnown RBP9.29□□□□□ -0.92
VPS35-211ENST00000569950 ESYT3A0FGR9 886 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 PRR23AA6NEV1 266 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 BUD23O43709 281 aaKnown RBP9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms