RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 AFG3L2Q9Y4W6 797 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 LEUTXA8MZ59 168 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 SPATA31C2B4DYI2 1134 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 ATG7O95352 703 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 HMGN1P05114 100 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 GNAO1P09471 354 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 NCF2P19878 526 aaPredicted RBP10.88□□□□□ -0.67
CLK3-226ENST00000569406 SNRPFP62306 86 aaKnown RBP10.88□□□□□ -0.67
CLK3-226ENST00000569406 DSC1Q08554 894 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 FAM91A1Q658Y4 838 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 DPY19L3Q6ZPD9 716 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 CATSPERGQ6ZRH7 1159 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 SPATA2LQ8IUW3 424 aaPredicted RBP10.88□□□□□ -0.67
CLK3-226ENST00000569406 OR2T34Q8NGX1 318 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 MARK4Q96L34 752 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 PCYT2Q99447 389 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 CD93Q9NPY3 652 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 LRFN2Q9ULH4 789 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 PCDHA10Q9Y5I2 948 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 KCNE2Q9Y6J6 123 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 TRDMT1O14717 391 aaKnown RBP10.88□□□□□ -0.67
CLK3-226ENST00000569406 FAM189A1O60320 539 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 CLIC3O95833 236 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 GLAP06280 429 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 CFHP08603 1231 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 MTHFD1P11586 935 aaKnown RBP10.88□□□□□ -0.67
CLK3-226ENST00000569406 ZNF26P17031 533 aaPredicted RBP10.88□□□□□ -0.67
CLK3-226ENST00000569406 SFNP31947 248 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 SLC18A1P54219 525 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 CYP24A1Q07973 514 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 TRAP1Q12931 704 aaKnown RBP10.88□□□□□ -0.67
CLK3-226ENST00000569406 TRIM32Q13049 653 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 TBCCQ15814 346 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 CCNG2Q16589 344 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 FAM102BQ5T8I3 360 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 ARHGEF16Q5VV41 709 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 C11orf63Q6NUN7 778 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 SV2AQ7L0J3 742 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 NECAB2Q7Z6G3 386 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 HORMAD1Q86X24 394 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 SCUBE3Q8IX30 993 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 CELF2-AS1Q8N7Q2 184 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 PPWD1Q96BP3 646 aaKnown RBP10.88□□□□□ -0.67
CLK3-226ENST00000569406 HDAC11Q96DB2 347 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 BCL2L14Q9BZR8 327 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 GPRC5BQ9NZH0 403 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 TMEM9Q9P0T7 183 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 STYXL1Q9Y6J8 313 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 IGKV6D-21A0A0A0MT36 114 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 DENND3A2RUS2 1198 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 GOLGA8SH3BPF8 625 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 BTN3A1O00481 513 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 SYN3O14994 580 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 KPNA5O15131 536 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 KRT19P08727 400 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 CYP11B1P15538 503 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 NPR3P17342 541 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 KCNA5P22460 613 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 PRKAR1BP31321 381 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 IKBKEQ14164 716 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 XKR9Q5GH70 373 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 ZBTB41Q5SVQ8 909 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 GTF2IRD2BQ6EKJ0 949 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 GTF2IRD2Q86UP8 949 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 TAGAPQ8N103 731 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 RIT1Q92963 219 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 CIDECQ96AQ7 238 aaPredicted RBP10.87□□□□□ -0.67
CLK3-226ENST00000569406 APOL6Q9BWW8 343 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 UCK2Q9BZX2 261 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 SFMBT1Q9UHJ3 866 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 SLCO3A1Q9UIG8 710 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 ANKRD6Q9Y2G4 727 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 NFASCO94856 1347 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 ADAM11O75078 769 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 NDST3O95803 873 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 SERPINA6P08185 405 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 BMP4P12644 408 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 COMTP21964 271 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 GCAP28676 217 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 HARS2P49590 506 aaKnown RBP10.87□□□□□ -0.67
CLK3-226ENST00000569406 OAZ1P54368 228 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 PKNOX1P55347 436 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 ALDH6A1Q02252 535 aaKnown RBP10.87□□□□□ -0.67
CLK3-226ENST00000569406 LRRC74AQ0VAA2 488 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 GPR68Q15743 365 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 AGMOQ6ZNB7 445 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 CDH26Q8IXH8 852 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 BIRC7Q96CA5 298 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 TEKT5Q96M29 485 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 PI4K2AQ9BTU6 479 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 IARS2Q9NSE4 1012 aaKnown RBP10.87□□□□□ -0.67
CLK3-226ENST00000569406 KLHL11Q9NVR0 708 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 IL37Q9NZH6 218 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 HNRNPCL2B2RXH8 293 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 CTDSP2O14595 271 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 AIM2O14862 343 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 ARHGEF9O43307 516 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 VNN1O95497 513 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 UNGP13051 313 aaPredicted RBP10.87□□□□□ -0.67
CLK3-226ENST00000569406 IL10P22301 178 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms