RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 ERBB2P04626 1255 aa11.8□□□□□ -0.52
CLK3-222ENST00000568232 CCNB1P14635 433 aa11.8□□□□□ -0.52
CLK3-222ENST00000568232 XPAP23025 273 aaPredicted RBP11.8□□□□□ -0.52
CLK3-222ENST00000568232 AK4P27144 223 aaPredicted RBP11.8□□□□□ -0.52
CLK3-222ENST00000568232 GPR3P46089 330 aa11.8□□□□□ -0.52
CLK3-222ENST00000568232 SULT1E1P49888 294 aa11.8□□□□□ -0.52
CLK3-222ENST00000568232 KIAA1024LP59773 190 aa11.8□□□□□ -0.52
CLK3-222ENST00000568232 RNASE9P60153 205 aaKnown RBP11.8□□□□□ -0.52
CLK3-222ENST00000568232 MC2RQ01718 297 aa11.8□□□□□ -0.52
CLK3-222ENST00000568232 GCNT1Q02742 428 aa11.8□□□□□ -0.52
CLK3-222ENST00000568232 BIRC2Q13490 618 aa11.8□□□□□ -0.52
CLK3-222ENST00000568232 MEA1Q16626 185 aa11.8□□□□□ -0.52
CLK3-222ENST00000568232 TMEM71Q6P5X7 295 aa11.8□□□□□ -0.52
CLK3-222ENST00000568232 C11orf57Q6ZUT1 292 aaPredicted RBP11.8□□□□□ -0.52
CLK3-222ENST00000568232 ZNF761Q86XN6 746 aaPredicted RBP11.8□□□□□ -0.52
CLK3-222ENST00000568232 TBCBQ99426 244 aa11.8□□□□□ -0.52
CLK3-222ENST00000568232 TRIM55Q9BYV6 548 aa11.8□□□□□ -0.52
CLK3-222ENST00000568232 ZYG11BQ9C0D3 744 aa11.8□□□□□ -0.52
CLK3-222ENST00000568232 PCDH12Q9NPG4 1184 aa11.8□□□□□ -0.52
CLK3-222ENST00000568232 TAAR2Q9P1P5 351 aa11.8□□□□□ -0.52
CLK3-222ENST00000568232 KCND3Q9UK17 655 aa11.8□□□□□ -0.52
CLK3-222ENST00000568232 TMEM184BQ9Y519 407 aaPredicted RBP11.8□□□□□ -0.52
CLK3-222ENST00000568232 PCDHB3Q9Y5E6 796 aa11.8□□□□□ -0.52
CLK3-222ENST00000568232 ST14Q9Y5Y6 855 aa11.8□□□□□ -0.52
CLK3-222ENST00000568232 OAS3Q9Y6K5 1087 aaKnown RBP11.8□□□□□ -0.52
CLK3-222ENST00000568232 RPS6KL1Q9Y6S9 549 aa11.8□□□□□ -0.52
CLK3-222ENST00000568232 PRSS38A1L453 326 aa11.79□□□□□ -0.52
CLK3-222ENST00000568232 CDC14CA4D256 554 aa11.79□□□□□ -0.52
CLK3-222ENST00000568232 TRIM49BA6NDI0 452 aa11.79□□□□□ -0.52
CLK3-222ENST00000568232 TNFRSF10CO14798 259 aa11.79□□□□□ -0.52
CLK3-222ENST00000568232 ZW10O43264 779 aa11.79□□□□□ -0.52
CLK3-222ENST00000568232 SORBS2O94875 1100 aaKnown RBP11.79□□□□□ -0.52
CLK3-222ENST00000568232 DLGAP3O95886 979 aa11.79□□□□□ -0.52
CLK3-222ENST00000568232 GNA15P30679 374 aa11.79□□□□□ -0.52
CLK3-222ENST00000568232 DLSTP36957 453 aa11.79□□□□□ -0.52
CLK3-222ENST00000568232 PRCPP42785 496 aa11.79□□□□□ -0.52
CLK3-222ENST00000568232 PMS2P54278 862 aa11.79□□□□□ -0.52
CLK3-222ENST00000568232 SLC6A3Q01959 620 aa11.79□□□□□ -0.52
CLK3-222ENST00000568232 DEUP1Q05D60 604 aa11.79□□□□□ -0.52
CLK3-222ENST00000568232 ELP6Q0PNE2 266 aa11.79□□□□□ -0.52
CLK3-222ENST00000568232 SQSTM1Q13501 440 aa11.79□□□□□ -0.52
CLK3-222ENST00000568232 AGERQ15109 404 aa11.79□□□□□ -0.52
CLK3-222ENST00000568232 INPP5JQ15735 1006 aaPredicted RBP11.79□□□□□ -0.52
CLK3-222ENST00000568232 SLC30A9Q6PML9 568 aa11.79□□□□□ -0.52
CLK3-222ENST00000568232 CEACAM20Q6UY09 585 aa11.79□□□□□ -0.52
CLK3-222ENST00000568232 NAGSQ8N159 534 aa11.79□□□□□ -0.52
CLK3-222ENST00000568232 PELI3Q8N2H9 469 aa11.79□□□□□ -0.52
CLK3-222ENST00000568232 TTYH3Q9C0H2 523 aa11.79□□□□□ -0.52
CLK3-222ENST00000568232 ZMYND15Q9H091 742 aa11.79□□□□□ -0.52
CLK3-222ENST00000568232 CARS2Q9HA77 564 aaKnown RBP11.79□□□□□ -0.52
CLK3-222ENST00000568232 LUZP4Q9P127 313 aa11.79□□□□□ -0.52
CLK3-222ENST00000568232 DKK3Q9UBP4 350 aa11.79□□□□□ -0.52
CLK3-222ENST00000568232 USP25Q9UHP3 1055 aa11.79□□□□□ -0.52
CLK3-222ENST00000568232 DNAI1Q9UI46 699 aa11.79□□□□□ -0.52
CLK3-222ENST00000568232 HPSEQ9Y251 543 aa11.79□□□□□ -0.52
CLK3-222ENST00000568232 POLHQ9Y253 713 aa11.79□□□□□ -0.52
CLK3-222ENST00000568232 RP1L1Q8IWN7 2480 aaPredicted RBP11.79□□□□□ -0.52
CLK3-222ENST00000568232 FAM170AA1A519 330 aa11.78□□□□□ -0.52
CLK3-222ENST00000568232 TEX33O43247 280 aa11.78□□□□□ -0.52
CLK3-222ENST00000568232 KATNA1O75449 491 aa11.78□□□□□ -0.52
CLK3-222ENST00000568232 TMCC1O94876 653 aa11.78□□□□□ -0.52
CLK3-222ENST00000568232 ZNF28P17035 718 aa11.78□□□□□ -0.52
CLK3-222ENST00000568232 CMA1P23946 247 aa11.78□□□□□ -0.52
CLK3-222ENST00000568232 PPM1FP49593 454 aaPredicted RBP11.78□□□□□ -0.52
CLK3-222ENST00000568232 NDUFA8P51970 172 aa11.78□□□□□ -0.52
CLK3-222ENST00000568232 FKBP3Q00688 224 aaKnown RBP11.78□□□□□ -0.52
CLK3-222ENST00000568232 RAD51Q06609 339 aa11.78□□□□□ -0.52
CLK3-222ENST00000568232 UGP2Q16851 508 aa11.78□□□□□ -0.52
CLK3-222ENST00000568232 SLC26A9Q7LBE3 791 aa11.78□□□□□ -0.52
CLK3-222ENST00000568232 EHBP1Q8NDI1 1231 aa11.78□□□□□ -0.52
CLK3-222ENST00000568232 NT5C3BQ969T7 300 aa11.78□□□□□ -0.52
CLK3-222ENST00000568232 INTS4Q96HW7 963 aaKnown RBP11.78□□□□□ -0.52
CLK3-222ENST00000568232 EXOC2Q96KP1 924 aa11.78□□□□□ -0.52
CLK3-222ENST00000568232 GDAP1L1Q96MZ0 367 aa11.78□□□□□ -0.52
CLK3-222ENST00000568232 TRIT1Q9H3H1 467 aaKnown RBP11.78□□□□□ -0.52
CLK3-222ENST00000568232 FBXO8Q9NRD0 319 aa11.78□□□□□ -0.52
CLK3-222ENST00000568232 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.78□□□□□ -0.52
CLK3-222ENST00000568232 MAP10Q9P2G4 905 aa11.78□□□□□ -0.52
CLK3-222ENST00000568232 PDP2Q9P2J9 529 aa11.78□□□□□ -0.52
CLK3-222ENST00000568232 RCOR3Q9P2K3 495 aaPredicted RBP11.78□□□□□ -0.52
CLK3-222ENST00000568232 CROTQ9UKG9 612 aa11.78□□□□□ -0.52
CLK3-222ENST00000568232 RCOR1Q9UKL0 485 aa11.78□□□□□ -0.52
CLK3-222ENST00000568232 TRBV23OR9-2A0A075B6M9 112 aa11.77□□□□□ -0.53
CLK3-222ENST00000568232 PMM2O15305 246 aa11.77□□□□□ -0.53
CLK3-222ENST00000568232 BUB1O43683 1085 aa11.77□□□□□ -0.53
CLK3-222ENST00000568232 RECQL5O94762 991 aaPredicted RBP11.77□□□□□ -0.53
CLK3-222ENST00000568232 KELP23276 732 aa11.77□□□□□ -0.53
CLK3-222ENST00000568232 TRIM23P36406 574 aa11.77□□□□□ -0.53
CLK3-222ENST00000568232 STAT1P42224 750 aa11.77□□□□□ -0.53
CLK3-222ENST00000568232 SYKP43405 635 aa11.77□□□□□ -0.53
CLK3-222ENST00000568232 GEMIN4P57678 1058 aaKnown RBP11.77□□□□□ -0.53
CLK3-222ENST00000568232 DNM1Q05193 864 aaKnown RBP11.77□□□□□ -0.53
CLK3-222ENST00000568232 ILF3Q12906 894 aaKnown RBP eCLIP11.77□□□□□ -0.53
CLK3-222ENST00000568232 ARHGAP22Q7Z5H3 698 aa11.77□□□□□ -0.53
CLK3-222ENST00000568232 ZSWIM9Q86XI8 627 aa11.77□□□□□ -0.53
CLK3-222ENST00000568232 ESX1Q8N693 406 aa11.77□□□□□ -0.53
CLK3-222ENST00000568232 C1orf131Q8NDD1 294 aaKnown RBP11.77□□□□□ -0.53
CLK3-222ENST00000568232 KCTD12Q96CX2 325 aaKnown RBP11.77□□□□□ -0.53
CLK3-222ENST00000568232 MOCOSQ96EN8 888 aa11.77□□□□□ -0.53
CLK3-222ENST00000568232 PGAP3Q96FM1 320 aaPredicted RBP11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms