RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 LOC285095A0A1B0GVY8 99 aa19.6■□□□□ 0.73
CLN3-225ENST00000566824 POM121BA6NF01 834 aa19.6■□□□□ 0.73
CLN3-225ENST00000566824 CAPN8A6NHC0 703 aa19.6■□□□□ 0.73
CLN3-225ENST00000566824 ANKRD66B4E2M5 251 aa19.6■□□□□ 0.73
CLN3-225ENST00000566824 PRAMEF26H0Y7S4 382 aa19.6■□□□□ 0.73
CLN3-225ENST00000566824 TM7SF2O76062 418 aa19.6■□□□□ 0.73
CLN3-225ENST00000566824 STK10O94804 968 aaKnown RBP19.6■□□□□ 0.73
CLN3-225ENST00000566824 HEXIM1O94992 359 aaKnown RBP19.6■□□□□ 0.73
CLN3-225ENST00000566824 AGTP01019 485 aa19.6■□□□□ 0.73
CLN3-225ENST00000566824 ATXN1LP0C7T5 689 aaKnown RBP19.6■□□□□ 0.73
CLN3-225ENST00000566824 GNSP15586 552 aa19.6■□□□□ 0.73
CLN3-225ENST00000566824 ENGP17813 658 aa19.6■□□□□ 0.73
CLN3-225ENST00000566824 HNRNPA2B1P22626 353 aaKnown RBP19.6■□□□□ 0.73
CLN3-225ENST00000566824 DPP6P42658 865 aa19.6■□□□□ 0.73
CLN3-225ENST00000566824 AFF3P51826 1226 aaKnown RBP19.6■□□□□ 0.73
CLN3-225ENST00000566824 SGCGQ13326 291 aa19.6■□□□□ 0.73
CLN3-225ENST00000566824 SPARCL1Q14515 664 aa19.6■□□□□ 0.73
CLN3-225ENST00000566824 KIF19Q2TAC6 998 aa19.6■□□□□ 0.73
CLN3-225ENST00000566824 WSCD2Q2TBF2 565 aa19.6■□□□□ 0.73
CLN3-225ENST00000566824 DENND2CQ68D51 928 aa19.6■□□□□ 0.73
CLN3-225ENST00000566824 ITPRIPL1Q6GPH6 555 aa19.6■□□□□ 0.73
CLN3-225ENST00000566824 TP53I13Q8NBR0 393 aaPredicted RBP19.6■□□□□ 0.73
CLN3-225ENST00000566824 COQ10AQ96MF6 247 aa19.6■□□□□ 0.73
CLN3-225ENST00000566824 SPO11Q9Y5K1 396 aa19.6■□□□□ 0.73
CLN3-225ENST00000566824 SNX11Q9Y5W9 270 aa19.6■□□□□ 0.73
CLN3-225ENST00000566824 SCN8AQ9UQD0 1980 aa19.59■□□□□ 0.73
CLN3-225ENST00000566824 CFAP69A5D8W1 941 aa19.59■□□□□ 0.73
CLN3-225ENST00000566824 PGRMC1O00264 195 aaKnown RBP19.59■□□□□ 0.73
CLN3-225ENST00000566824 OPHN1O60890 802 aa19.59■□□□□ 0.73
CLN3-225ENST00000566824 RECQL5O94762 991 aaPredicted RBP19.59■□□□□ 0.73
CLN3-225ENST00000566824 ITGAVP06756 1048 aa19.59■□□□□ 0.73
CLN3-225ENST00000566824 C1SP09871 688 aa19.59■□□□□ 0.73
CLN3-225ENST00000566824 ELFN1P0C7U0 828 aa19.59■□□□□ 0.73
CLN3-225ENST00000566824 CA4P22748 312 aa19.59■□□□□ 0.73
CLN3-225ENST00000566824 CD38P28907 300 aa19.59■□□□□ 0.73
CLN3-225ENST00000566824 IGFALSP35858 605 aa19.59■□□□□ 0.73
CLN3-225ENST00000566824 RPL26P61254 145 aaKnown RBP19.59■□□□□ 0.73
CLN3-225ENST00000566824 GRIK2Q13002 908 aa19.59■□□□□ 0.73
CLN3-225ENST00000566824 SIRPB2Q5JXA9 342 aa19.59■□□□□ 0.73
CLN3-225ENST00000566824 PRAMEF14Q5SWL7 426 aa19.59■□□□□ 0.73
CLN3-225ENST00000566824 TPRG1LQ5T0D9 272 aa19.59■□□□□ 0.73
CLN3-225ENST00000566824 LRRC66Q68CR7 880 aa19.59■□□□□ 0.73
CLN3-225ENST00000566824 USP45Q70EL2 814 aa19.59■□□□□ 0.73
CLN3-225ENST00000566824 SPATS2Q86XZ4 545 aaKnown RBP19.59■□□□□ 0.73
CLN3-225ENST00000566824 SLC25A41Q8N5S1 370 aa19.59■□□□□ 0.73
CLN3-225ENST00000566824 OR13H1Q8NG92 308 aa19.59■□□□□ 0.73
CLN3-225ENST00000566824 ACTRT1Q8TDG2 376 aa19.59■□□□□ 0.73
CLN3-225ENST00000566824 MAIP1Q8WWC4 291 aa19.59■□□□□ 0.73
CLN3-225ENST00000566824 ASB12Q8WXK4 309 aa19.59■□□□□ 0.73
CLN3-225ENST00000566824 EID2BQ96D98 161 aa19.59■□□□□ 0.73
CLN3-225ENST00000566824 RMDN1Q96DB5 314 aa19.59■□□□□ 0.73
CLN3-225ENST00000566824 LENG8Q96PV6 779 aaPredicted RBP19.59■□□□□ 0.73
CLN3-225ENST00000566824 APOL2Q9BQE5 337 aa19.59■□□□□ 0.73
CLN3-225ENST00000566824 FICDQ9BVA6 458 aa19.59■□□□□ 0.73
CLN3-225ENST00000566824 IL21RQ9HBE5 538 aa19.59■□□□□ 0.73
CLN3-225ENST00000566824 TPX2Q9ULW0 747 aaKnown RBP19.59■□□□□ 0.73
CLN3-225ENST00000566824 RPL26L1Q9UNX3 145 aaKnown RBP19.59■□□□□ 0.73
CLN3-225ENST00000566824 ANKRD6Q9Y2G4 727 aa19.59■□□□□ 0.73
CLN3-225ENST00000566824 CFAP54Q96N23 3096 aa19.59■□□□□ 0.73
CLN3-225ENST00000566824 VILLO15195 856 aa19.58■□□□□ 0.73
CLN3-225ENST00000566824 LZTS3O60299 673 aaPredicted RBP19.58■□□□□ 0.73
CLN3-225ENST00000566824 CLDN7O95471 211 aa19.58■□□□□ 0.73
CLN3-225ENST00000566824 NDST3O95803 873 aa19.58■□□□□ 0.73
CLN3-225ENST00000566824 IFNB1P01574 187 aa19.58■□□□□ 0.73
CLN3-225ENST00000566824 CYP2A6P11509 494 aaPredicted RBP19.58■□□□□ 0.73
CLN3-225ENST00000566824 HOXD11P31277 338 aaPredicted RBP19.58■□□□□ 0.73
CLN3-225ENST00000566824 AKT2P31751 481 aa19.58■□□□□ 0.73
CLN3-225ENST00000566824 ADRA1AP35348 466 aa19.58■□□□□ 0.73
CLN3-225ENST00000566824 NUDT1P36639 197 aa19.58■□□□□ 0.73
CLN3-225ENST00000566824 ETV3P41162 512 aa19.58■□□□□ 0.73
CLN3-225ENST00000566824 GRIA4P48058 902 aa19.58■□□□□ 0.73
CLN3-225ENST00000566824 PTSQ03393 145 aa19.58■□□□□ 0.73
CLN3-225ENST00000566824 ACOX1Q15067 660 aa19.58■□□□□ 0.73
CLN3-225ENST00000566824 IRF4Q15306 451 aa19.58■□□□□ 0.73
CLN3-225ENST00000566824 DRICH1Q6PGQ1 229 aaPredicted RBP19.58■□□□□ 0.73
CLN3-225ENST00000566824 ARHGEF18Q6ZSZ5 1173 aa19.58■□□□□ 0.73
CLN3-225ENST00000566824 KLHDC8BQ8IXV7 354 aa19.58■□□□□ 0.73
CLN3-225ENST00000566824 C12orf50Q8NA57 414 aaPredicted RBP19.58■□□□□ 0.73
CLN3-225ENST00000566824 PLA2G15Q8NCC3 412 aa19.58■□□□□ 0.73
CLN3-225ENST00000566824 FUBP1Q96AE4 644 aaKnown RBP19.58■□□□□ 0.73
CLN3-225ENST00000566824 IFT43Q96FT9 208 aa19.58■□□□□ 0.73
CLN3-225ENST00000566824 CAPZA3Q96KX2 299 aa19.58■□□□□ 0.73
CLN3-225ENST00000566824 FERMT1Q9BQL6 677 aa19.58■□□□□ 0.73
CLN3-225ENST00000566824 GTPBP2Q9BX10 602 aaKnown RBP19.58■□□□□ 0.73
CLN3-225ENST00000566824 NUSAP1Q9BXS6 441 aaKnown RBP19.58■□□□□ 0.73
CLN3-225ENST00000566824 DRG1Q9Y295 367 aaKnown RBP19.58■□□□□ 0.73
CLN3-225ENST00000566824 ZKSCAN5Q9Y2L8 839 aa19.58■□□□□ 0.73
CLN3-225ENST00000566824 TDRD6O60522 2096 aaKnown RBP19.58■□□□□ 0.72
CLN3-225ENST00000566824 ASCC3Q8N3C0 2202 aaKnown RBP19.58■□□□□ 0.72
CLN3-225ENST00000566824 CABIN1Q9Y6J0 2220 aa19.58■□□□□ 0.72
CLN3-225ENST00000566824 CTAGE9A4FU28 777 aa19.57■□□□□ 0.72
CLN3-225ENST00000566824 PRR5-ARHGAP8B1AHC4 643 aa19.57■□□□□ 0.72
CLN3-225ENST00000566824 PDE2AO00408 941 aaPredicted RBP19.57■□□□□ 0.72
CLN3-225ENST00000566824 CES2O00748 559 aa19.57■□□□□ 0.72
CLN3-225ENST00000566824 ARHGAP33O14559 1287 aa19.57■□□□□ 0.72
CLN3-225ENST00000566824 CDX4O14627 284 aaPredicted RBP19.57■□□□□ 0.72
CLN3-225ENST00000566824 AURKAO14965 403 aa19.57■□□□□ 0.72
CLN3-225ENST00000566824 USP12O75317 370 aa19.57■□□□□ 0.72
CLN3-225ENST00000566824 STIP1P31948 543 aaKnown RBP19.57■□□□□ 0.72
CLN3-225ENST00000566824 RPL22P35268 128 aaKnown RBP19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms