RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 PAAF1Q9BRP4 392 aa13.25□□□□□ -0.29
CLN3-210ENST00000563874 MUC3BQ9H195 1237 aa13.25□□□□□ -0.29
CLN3-210ENST00000563874 AKTIPQ9H8T0 292 aa13.25□□□□□ -0.29
CLN3-210ENST00000563874 CHCHD3Q9NX63 227 aaKnown RBP13.25□□□□□ -0.29
CLN3-210ENST00000563874 RBM47A0AV96 593 aaKnown RBP13.24□□□□□ -0.29
CLN3-210ENST00000563874 HHLA1C9JL84 531 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 DLGAP1O14490 977 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 MT-ND1P03886 318 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 HNRNPCP07910 306 aaKnown RBP eCLIP13.24□□□□□ -0.29
CLN3-210ENST00000563874 DNAJB2P25686 324 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 CDKN2DP55273 166 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 WNT3AP56704 352 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 ITKQ08881 620 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 PSMD5Q16401 504 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 XKR4Q5GH76 650 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 RAB41Q5JT25 222 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 KIAA0930Q6ICG6 404 aaPredicted RBP13.24□□□□□ -0.29
CLN3-210ENST00000563874 ERMP1Q7Z2K6 904 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 GPR141Q7Z602 305 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 DPP9Q86TI2 863 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 FBXL20Q96IG2 436 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 TSGA13Q96PP4 275 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 KCNA7Q96RP8 456 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 UHRF1Q96T88 793 aaPredicted RBP13.24□□□□□ -0.29
CLN3-210ENST00000563874 SOX17Q9H6I2 414 aaPredicted RBP13.24□□□□□ -0.29
CLN3-210ENST00000563874 MAP10Q9P2G4 905 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 CIDEBQ9UHD4 219 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 KCNH4Q9UQ05 1017 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 NEU3Q9UQ49 428 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 RRN3P2A6NIE6 340 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 ZNF189O75820 626 aaPredicted RBP13.24□□□□□ -0.29
CLN3-210ENST00000563874 PGFP49763 221 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 GEMP55040 296 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 FOXA1P55317 472 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 DUSP28Q4G0W2 176 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 FAM45BPQ6NSW5 357 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 RANBP10Q6VN20 620 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 GPRC5AQ8NFJ5 357 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 FAM45AQ8TCE6 357 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 MIPOL1Q8TD10 442 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 C12orf43Q96C57 262 aaKnown RBP13.24□□□□□ -0.29
CLN3-210ENST00000563874 ISOC1Q96CN7 298 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 CDCA5Q96FF9 252 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 IL12RB2Q99665 862 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 ENTPD7Q9NQZ7 604 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 SLC8A2Q9UPR5 921 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 OTOFQ9HC10 1997 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 DHRS12A0PJE2 317 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 MATN3O15232 486 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 PAGE1O75459 146 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 TFPTP0C1Z6 253 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 CAPN3P20807 821 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 DNAJB1P25685 340 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 SH3BP2P78314 561 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 GRB7Q14451 532 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 CHST15Q7LFX5 561 aaPredicted RBP13.24□□□□□ -0.29
CLN3-210ENST00000563874 DDIASQ8IXT1 998 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 ALDH16A1Q8IZ83 802 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 ANKFN1Q8N957 763 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 LPPQ93052 612 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 ADI1Q9BV57 179 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 OAZ3Q9UMX2 235 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 DNAJC15Q9Y5T4 150 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 SQORQ9Y6N5 450 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 V9GYQ6 96 aa13.24□□□□□ -0.29
CLN3-210ENST00000563874 RALGAPA2Q2PPJ7 1873 aa13.23□□□□□ -0.29
CLN3-210ENST00000563874 MYLKQ15746 1914 aa13.23□□□□□ -0.29
CLN3-210ENST00000563874 CASTOR2A6NHX0 329 aa13.23□□□□□ -0.29
CLN3-210ENST00000563874 RBP1P09455 135 aa13.23□□□□□ -0.29
CLN3-210ENST00000563874 MTHFD1P11586 935 aaKnown RBP13.23□□□□□ -0.29
CLN3-210ENST00000563874 BMP2P12643 396 aa13.23□□□□□ -0.29
CLN3-210ENST00000563874 GPX3P22352 226 aa13.23□□□□□ -0.29
CLN3-210ENST00000563874 POLD2P49005 469 aa13.23□□□□□ -0.29
CLN3-210ENST00000563874 ARSDP51689 593 aa13.23□□□□□ -0.29
CLN3-210ENST00000563874 APLP1P51693 650 aa13.23□□□□□ -0.29
CLN3-210ENST00000563874 ANKDD1AQ495B1 522 aa13.23□□□□□ -0.29
CLN3-210ENST00000563874 C8orf82Q6P1X6 216 aaPredicted RBP13.23□□□□□ -0.29
CLN3-210ENST00000563874 MYLPFQ96A32 169 aa13.23□□□□□ -0.29
CLN3-210ENST00000563874 CCDC126Q96EE4 140 aa13.23□□□□□ -0.29
CLN3-210ENST00000563874 NSUN5Q96P11 429 aaKnown RBP13.23□□□□□ -0.29
CLN3-210ENST00000563874 GAD1Q99259 594 aa13.23□□□□□ -0.29
CLN3-210ENST00000563874 ARPC5LQ9BPX5 153 aa13.23□□□□□ -0.29
CLN3-210ENST00000563874 MARCH4Q9P2E8 410 aaPredicted RBP13.23□□□□□ -0.29
CLN3-210ENST00000563874 VWA7Q9Y334 891 aa13.23□□□□□ -0.29
CLN3-210ENST00000563874 KCTD3Q9Y597 815 aa13.23□□□□□ -0.29
CLN3-210ENST00000563874 PCDHGA4Q9Y5G9 962 aa13.23□□□□□ -0.29
CLN3-210ENST00000563874 IMPDH1P20839 514 aa13.23□□□□□ -0.29
CLN3-210ENST00000563874 CES1P23141 567 aa13.23□□□□□ -0.29
CLN3-210ENST00000563874 MAPK10P53779 464 aa13.23□□□□□ -0.29
CLN3-210ENST00000563874 ESRRGP62508 458 aa13.23□□□□□ -0.29
CLN3-210ENST00000563874 ZNF678Q5SXM1 525 aa13.23□□□□□ -0.29
CLN3-210ENST00000563874 FASTKD5Q7L8L6 764 aaKnown RBP13.23□□□□□ -0.29
CLN3-210ENST00000563874 SLC15A3Q8IY34 581 aa13.23□□□□□ -0.29
CLN3-210ENST00000563874 PCYOX1LQ8NBM8 494 aa13.23□□□□□ -0.29
CLN3-210ENST00000563874 HM13Q8TCT9 377 aa13.23□□□□□ -0.29
CLN3-210ENST00000563874 PTERQ96BW5 349 aa13.23□□□□□ -0.29
CLN3-210ENST00000563874 FCRL2Q96LA5 508 aaPredicted RBP13.23□□□□□ -0.29
CLN3-210ENST00000563874 UBXN10Q96LJ8 280 aa13.23□□□□□ -0.29
CLN3-210ENST00000563874 KLHL5Q96PQ7 755 aa13.23□□□□□ -0.29
CLN3-210ENST00000563874 BTRCQ9Y297 605 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms