RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 UBR3Q6ZT12 1888 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 LOC102723996A0A087X1L8 192 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 A0A1W2PQ27 194 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 A0A1W2PQ45 241 aaPredicted RBP5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 A0A1W2PQ64 194 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 A0A1W2PQC6 194 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 A0A1W2PQD8 194 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 A0A1W2PQY0 241 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 TCRBV21S2A2A0A5A6 115 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 EME2A4GXA9 379 aaPredicted RBP5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 LRRC72A6NJI9 287 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 A6NL46 340 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 CDRT15L2A8MXV6 281 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 FOXO6A8MYZ6 492 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 E9PLN8 166 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 NEMFO60524 1076 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 CBFA2T3O75081 653 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 UFL1O94874 794 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 KLHL18O94889 574 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 GLI4P10075 376 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 CD72P21854 359 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 HIBADHP31937 336 aaKnown RBP5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 NF2P35240 595 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 THBS4P35443 961 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 SOX6P35712 828 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 VIPR2P41587 438 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 STX1BP61266 288 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 PTH1RQ03431 593 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 PRKCZQ05513 592 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 NIPAL4Q0D2K0 466 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 TMEM196Q5HYL7 178 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 KCNT1Q5JUK3 1230 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 PHF19Q5T6S3 580 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 FAM160B1Q5W0V3 765 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 HEPHL1Q6MZM0 1159 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 LIPIQ6XZB0 460 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 PTCHD4Q6ZW05 846 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 ZNF572Q7Z3I7 529 aaPredicted RBP5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 MIER3Q7Z3K6 550 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 CAMKMTQ7Z624 323 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 TICAM1Q8IUC6 712 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 ELOA2Q8IYF1 753 aaPredicted RBP5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 UNC5BQ8IZJ1 945 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 MAML2Q8IZL2 1156 aaPredicted RBP5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 SYNE4Q8N205 404 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 RBM15BQ8NDT2 890 aaKnown RBP5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 DNAJB14Q8TBM8 379 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 BPIFB1Q8TDL5 484 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 BCAS4Q8TDM0 211 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 PPP2R3CQ969Q6 453 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 ELMOD3Q96FG2 381 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 TCF25Q9BQ70 676 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 VKORC1Q9BQB6 163 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 EDEM2Q9BV94 578 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 MOV10L1Q9BXT6 1211 aaKnown RBP5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 GCOM2Q9BZD3 368 aaPredicted RBP5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 GLIS2Q9BZE0 524 aaPredicted RBP5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 LRRCC1Q9C099 1032 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 SLC7A5P2Q9GIP4 190 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 BICC1Q9H694 974 aaKnown RBP5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 SYNPO2LQ9H987 977 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 CARS2Q9HA77 564 aaKnown RBP5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 SYTL2Q9HCH5 934 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 INTS13Q9NVM9 706 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 ARHGEF38Q9NXL2 777 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 ING3Q9NXR8 418 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 JKAMPQ9P055 326 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 COX16Q9P0S2 106 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 MTMR6Q9Y217 621 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 C10orf71Q711Q0 1435 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 WDR19Q8NEZ3 1342 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 FAM90A8PA6NJQ4 464 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 SLC9B1P1A6NJY1 282 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 M0QZQ0 153 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 SLC33A1O00400 549 aaPredicted RBP5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 CD3EAPO15446 510 aaKnown RBP5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 PRICKLE3O43900 615 aaPredicted RBP5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 TACC1O75410 805 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 BAG3O95817 575 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 TGFAP01135 160 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 ESR1P03372 595 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 GBAP04062 536 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 ASGR1P07306 291 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 FAM90A13PP0C7W8 464 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 FAM90A24PP0C7X0 464 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 SRCP12931 536 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 PNLIPP16233 465 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 ITGB5P18084 799 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 CHRNA5P30532 468 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 CD96P40200 585 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 ARL1P40616 181 aaPredicted RBP5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 EFNA5P52803 228 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 METAP1P53582 386 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 RTP1P59025 263 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 FKBP1AP62942 108 aaKnown RBP5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 GFPT1Q06210 699 aaPredicted RBP5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 IKQ13123 557 aaPredicted RBP5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 KARSQ15046 597 aaKnown RBP5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 TAZQ16635 292 aa5.28□□□□□ -1.56
VPS35P1-201ENST00000563400 DPCR1Q3MIW9 517 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms