RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 CCDC97Q96F63 343 aaPredicted RBP15.8■□□□□ 0.12
CLK3-211ENST00000563297 WBP1Q96G27 269 aa15.8■□□□□ 0.12
CLK3-211ENST00000563297 ZNF599Q96NL3 588 aa15.8■□□□□ 0.12
CLK3-211ENST00000563297 NAP1L5Q96NT1 182 aaPredicted RBP15.8■□□□□ 0.12
CLK3-211ENST00000563297 GFM1Q96RP9 751 aaKnown RBP15.8■□□□□ 0.12
CLK3-211ENST00000563297 BPIFA3Q9BQP9 254 aa15.8■□□□□ 0.12
CLK3-211ENST00000563297 LGR4Q9BXB1 951 aa15.8■□□□□ 0.12
CLK3-211ENST00000563297 NAT10Q9H0A0 1025 aaKnown RBP15.8■□□□□ 0.12
CLK3-211ENST00000563297 FGF22Q9HCT0 170 aa15.8■□□□□ 0.12
CLK3-211ENST00000563297 TMEM63CQ9P1W3 806 aa15.8■□□□□ 0.12
CLK3-211ENST00000563297 SEPT3Q9UH03 358 aa15.8■□□□□ 0.12
CLK3-211ENST00000563297 A0A1W2PQC6 194 aa15.79■□□□□ 0.12
CLK3-211ENST00000563297 SMTNL1A8MU46 457 aa15.79■□□□□ 0.12
CLK3-211ENST00000563297 TNFRSF10CO14798 259 aa15.79■□□□□ 0.12
CLK3-211ENST00000563297 PEX11BO96011 259 aa15.79■□□□□ 0.12
CLK3-211ENST00000563297 RPLP0P05388 317 aaKnown RBP15.79■□□□□ 0.12
CLK3-211ENST00000563297 SKILP12757 684 aa15.79■□□□□ 0.12
CLK3-211ENST00000563297 AMPD1P23109 780 aa15.79■□□□□ 0.12
CLK3-211ENST00000563297 KELP23276 732 aa15.79■□□□□ 0.12
CLK3-211ENST00000563297 IL1R2P27930 398 aa15.79■□□□□ 0.12
CLK3-211ENST00000563297 PCK1P35558 622 aa15.79■□□□□ 0.12
CLK3-211ENST00000563297 AP1S1P61966 158 aa15.79■□□□□ 0.12
CLK3-211ENST00000563297 CFHR1Q03591 330 aa15.79■□□□□ 0.12
CLK3-211ENST00000563297 KLHL30Q0D2K2 578 aa15.79■□□□□ 0.12
CLK3-211ENST00000563297 FILIP1LQ4L180 1135 aa15.79■□□□□ 0.12
CLK3-211ENST00000563297 TAF1BQ53T94 588 aaPredicted RBP15.79■□□□□ 0.12
CLK3-211ENST00000563297 TMCO4Q5TGY1 634 aa15.79■□□□□ 0.12
CLK3-211ENST00000563297 TAF8Q7Z7C8 310 aa15.79■□□□□ 0.12
CLK3-211ENST00000563297 SFTPA2Q8IWL1 248 aa15.79■□□□□ 0.12
CLK3-211ENST00000563297 CBARPQ8N350 705 aaPredicted RBP15.79■□□□□ 0.12
CLK3-211ENST00000563297 FAM46DQ8NEK8 389 aa15.79■□□□□ 0.12
CLK3-211ENST00000563297 SPOCK2Q92563 424 aa15.79■□□□□ 0.12
CLK3-211ENST00000563297 ZNF653Q96CK0 615 aa15.79■□□□□ 0.12
CLK3-211ENST00000563297 COQ10AQ96MF6 247 aa15.79■□□□□ 0.12
CLK3-211ENST00000563297 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.79■□□□□ 0.12
CLK3-211ENST00000563297 FOXP3Q9BZS1 431 aa15.79■□□□□ 0.12
CLK3-211ENST00000563297 TMEM168Q9H0V1 697 aa15.79■□□□□ 0.12
CLK3-211ENST00000563297 ISCUQ9H1K1 167 aa15.79■□□□□ 0.12
CLK3-211ENST00000563297 LRRN3Q9H3W5 708 aa15.79■□□□□ 0.12
CLK3-211ENST00000563297 ETNK2Q9NVF9 386 aa15.79■□□□□ 0.12
CLK3-211ENST00000563297 MYO1AQ9UBC5 1043 aa15.79■□□□□ 0.12
CLK3-211ENST00000563297 B4GALT6Q9UBX8 382 aa15.79■□□□□ 0.12
CLK3-211ENST00000563297 APPL1Q9UKG1 709 aa15.79■□□□□ 0.12
CLK3-211ENST00000563297 PCDHGC4Q9Y5F7 938 aa15.79■□□□□ 0.12
CLK3-211ENST00000563297 SCINQ9Y6U3 715 aa15.79■□□□□ 0.12
CLK3-211ENST00000563297 CFAP46Q8IYW2 2715 aa15.79■□□□□ 0.12
CLK3-211ENST00000563297 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP15.78■□□□□ 0.12
CLK3-211ENST00000563297 D6RAR5 112 aa15.78■□□□□ 0.12
CLK3-211ENST00000563297 TMX2-CTNND1H3BSU7 103 aa15.78■□□□□ 0.12
CLK3-211ENST00000563297 PLD2O14939 933 aa15.78■□□□□ 0.12
CLK3-211ENST00000563297 HTRA2O43464 458 aaPredicted RBP15.78■□□□□ 0.12
CLK3-211ENST00000563297 NOBOXO60393 691 aa15.78■□□□□ 0.12
CLK3-211ENST00000563297 ITGA2BP08514 1039 aa15.78■□□□□ 0.12
CLK3-211ENST00000563297 TCF4P15884 667 aa15.78■□□□□ 0.12
CLK3-211ENST00000563297 GLB1P16278 677 aa15.78■□□□□ 0.12
CLK3-211ENST00000563297 CR2P20023 1033 aa15.78■□□□□ 0.12
CLK3-211ENST00000563297 UGT1A5P35504 534 aa15.78■□□□□ 0.12
CLK3-211ENST00000563297 INHBCP55103 352 aa15.78■□□□□ 0.12
CLK3-211ENST00000563297 ACOX1Q15067 660 aa15.78■□□□□ 0.12
CLK3-211ENST00000563297 DPYSL2Q16555 572 aa15.78■□□□□ 0.12
CLK3-211ENST00000563297 BOLA3Q53S33 107 aa15.78■□□□□ 0.12
CLK3-211ENST00000563297 RAB11FIP2Q7L804 512 aa15.78■□□□□ 0.12
CLK3-211ENST00000563297 POLNQ7Z5Q5 900 aa15.78■□□□□ 0.12
CLK3-211ENST00000563297 PGBD5Q8N414 524 aa15.78■□□□□ 0.12
CLK3-211ENST00000563297 FBXO39Q8N4B4 442 aa15.78■□□□□ 0.12
CLK3-211ENST00000563297 Q8N9G6 341 aaPredicted RBP15.78■□□□□ 0.12
CLK3-211ENST00000563297 CCL4L1Q8NHW4 92 aa15.78■□□□□ 0.12
CLK3-211ENST00000563297 TTC9Q92623 222 aa15.78■□□□□ 0.12
CLK3-211ENST00000563297 ZWILCHQ9H900 591 aa15.78■□□□□ 0.12
CLK3-211ENST00000563297 EPB41L5Q9HCM4 733 aa15.78■□□□□ 0.12
CLK3-211ENST00000563297 CYP4F12Q9HCS2 524 aa15.78■□□□□ 0.12
CLK3-211ENST00000563297 MRPL47Q9HD33 250 aaKnown RBP15.78■□□□□ 0.12
CLK3-211ENST00000563297 SCN8AQ9UQD0 1980 aa15.77■□□□□ 0.12
CLK3-211ENST00000563297 A0A1B0GTH6 734 aa15.77■□□□□ 0.12
CLK3-211ENST00000563297 H3BRJ5 948 aa15.77■□□□□ 0.12
CLK3-211ENST00000563297 K7ENP7 123 aa15.77■□□□□ 0.12
CLK3-211ENST00000563297 MAFKO60675 156 aa15.77■□□□□ 0.12
CLK3-211ENST00000563297 MYBL1P10243 752 aa15.77■□□□□ 0.12
CLK3-211ENST00000563297 PNLIPP16233 465 aa15.77■□□□□ 0.12
CLK3-211ENST00000563297 ARL4AP40617 200 aa15.77■□□□□ 0.12
CLK3-211ENST00000563297 CLN3Q13286 438 aa15.77■□□□□ 0.12
CLK3-211ENST00000563297 EIF3IQ13347 325 aaKnown RBP15.77■□□□□ 0.12
CLK3-211ENST00000563297 NR1I3Q14994 352 aa15.77■□□□□ 0.12
CLK3-211ENST00000563297 SMTNL2Q2TAL5 461 aa15.77■□□□□ 0.12
CLK3-211ENST00000563297 CERCAMQ5T4B2 595 aa15.77■□□□□ 0.12
CLK3-211ENST00000563297 INO80CQ6PI98 192 aaPredicted RBP15.77■□□□□ 0.12
CLK3-211ENST00000563297 CCNJLQ8IV13 435 aa15.77■□□□□ 0.12
CLK3-211ENST00000563297 TRIM11Q96F44 468 aa15.77■□□□□ 0.12
CLK3-211ENST00000563297 TMEM74Q96NL1 305 aa15.77■□□□□ 0.12
CLK3-211ENST00000563297 NUDCD1Q96RS6 583 aa15.77■□□□□ 0.12
CLK3-211ENST00000563297 DPEP2Q9H4A9 486 aa15.77■□□□□ 0.12
CLK3-211ENST00000563297 WDR26Q9H7D7 661 aa15.77■□□□□ 0.12
CLK3-211ENST00000563297 NOD2Q9HC29 1040 aa15.77■□□□□ 0.12
CLK3-211ENST00000563297 LRIT1Q9P2V4 623 aa15.77■□□□□ 0.12
CLK3-211ENST00000563297 ZNF462Q96JM2 2506 aa15.76■□□□□ 0.11
CLK3-211ENST00000563297 A0A1W2PQ67 120 aa15.76■□□□□ 0.11
CLK3-211ENST00000563297 PRSS38A1L453 326 aa15.76■□□□□ 0.11
CLK3-211ENST00000563297 PDE2AO00408 941 aaPredicted RBP15.76■□□□□ 0.11
CLK3-211ENST00000563297 EFSO43281 561 aa15.76■□□□□ 0.11
CLK3-211ENST00000563297 SOCS5O75159 536 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms