RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 VIPR1P32241 457 aa16.9■□□□□ 0.3
CLK3-210ENST00000563112 TAS2R40P59535 323 aa16.9■□□□□ 0.3
CLK3-210ENST00000563112 SRP54P61011 504 aaKnown RBP16.9■□□□□ 0.3
CLK3-210ENST00000563112 GALNT2Q10471 571 aa16.9■□□□□ 0.3
CLK3-210ENST00000563112 CDKN3Q16667 212 aa16.9■□□□□ 0.3
CLK3-210ENST00000563112 C6orf132Q5T0Z8 1188 aa16.9■□□□□ 0.3
CLK3-210ENST00000563112 ARMC12Q5T9G4 340 aa16.9■□□□□ 0.3
CLK3-210ENST00000563112 NCBP2-AS2Q69YL0 99 aa16.9■□□□□ 0.3
CLK3-210ENST00000563112 EFL1Q7Z2Z2 1120 aaKnown RBP16.9■□□□□ 0.3
CLK3-210ENST00000563112 RHOT2Q8IXI1 618 aa16.9■□□□□ 0.3
CLK3-210ENST00000563112 TEX26Q8N6G2 289 aa16.9■□□□□ 0.3
CLK3-210ENST00000563112 TPCN2Q8NHX9 752 aa16.9■□□□□ 0.3
CLK3-210ENST00000563112 SLC35G2Q8TBE7 412 aa16.9■□□□□ 0.3
CLK3-210ENST00000563112 DEPDC7Q96QD5 511 aa16.9■□□□□ 0.3
CLK3-210ENST00000563112 CHP1Q99653 195 aa16.9■□□□□ 0.3
CLK3-210ENST00000563112 POLR1EQ9GZS1 481 aaKnown RBP16.9■□□□□ 0.3
CLK3-210ENST00000563112 PNMA8BQ9ULN7 279 aaPredicted RBP16.9■□□□□ 0.3
CLK3-210ENST00000563112 U3KQA8 63 aa16.9■□□□□ 0.3
CLK3-210ENST00000563112 EME2A4GXA9 379 aaPredicted RBP16.89■□□□□ 0.29
CLK3-210ENST00000563112 AKR1B15C9JRZ8 316 aaPredicted RBP16.89■□□□□ 0.29
CLK3-210ENST00000563112 PDE2AO00408 941 aaPredicted RBP16.89■□□□□ 0.29
CLK3-210ENST00000563112 CCNCP24863 283 aa16.89■□□□□ 0.29
CLK3-210ENST00000563112 ARHGAP25P42331 645 aa16.89■□□□□ 0.29
CLK3-210ENST00000563112 KIAA1024LP59773 190 aa16.89■□□□□ 0.29
CLK3-210ENST00000563112 TRAF2Q12933 501 aa16.89■□□□□ 0.29
CLK3-210ENST00000563112 ARHGEF7Q14155 803 aa16.89■□□□□ 0.29
CLK3-210ENST00000563112 RTP5Q14D33 572 aa16.89■□□□□ 0.29
CLK3-210ENST00000563112 ALG11Q2TAA5 492 aa16.89■□□□□ 0.29
CLK3-210ENST00000563112 DENND2CQ68D51 928 aa16.89■□□□□ 0.29
CLK3-210ENST00000563112 LVRNQ6Q4G3 990 aa16.89■□□□□ 0.29
CLK3-210ENST00000563112 GKN2Q86XP6 184 aa16.89■□□□□ 0.29
CLK3-210ENST00000563112 CPNE8Q86YQ8 564 aa16.89■□□□□ 0.29
CLK3-210ENST00000563112 PLA2G15Q8NCC3 412 aa16.89■□□□□ 0.29
CLK3-210ENST00000563112 NAT6Q93015 286 aa16.89■□□□□ 0.29
CLK3-210ENST00000563112 ZNF830Q96NB3 372 aaPredicted RBP16.89■□□□□ 0.29
CLK3-210ENST00000563112 TSGA13Q96PP4 275 aa16.89■□□□□ 0.29
CLK3-210ENST00000563112 SEMA3CQ99985 751 aa16.89■□□□□ 0.29
CLK3-210ENST00000563112 BOCQ9BWV1 1114 aa16.89■□□□□ 0.29
CLK3-210ENST00000563112 CLPBQ9H078 707 aa16.89■□□□□ 0.29
CLK3-210ENST00000563112 SPTLC3Q9NUV7 552 aa16.89■□□□□ 0.29
CLK3-210ENST00000563112 AMACRQ9UHK6 382 aa16.89■□□□□ 0.29
CLK3-210ENST00000563112 ITPR1Q14643 2758 aa16.89■□□□□ 0.29
CLK3-210ENST00000563112 CFAP47Q6ZTR5 3102 aa16.88■□□□□ 0.29
CLK3-210ENST00000563112 PSMD11O00231 422 aa16.88■□□□□ 0.29
CLK3-210ENST00000563112 HEXIM1O94992 359 aaKnown RBP16.88■□□□□ 0.29
CLK3-210ENST00000563112 PGLSO95336 258 aa16.88■□□□□ 0.29
CLK3-210ENST00000563112 HOXC4P09017 264 aaPredicted RBP16.88■□□□□ 0.29
CLK3-210ENST00000563112 CA4P22748 312 aa16.88■□□□□ 0.29
CLK3-210ENST00000563112 KDELR1P24390 212 aa16.88■□□□□ 0.29
CLK3-210ENST00000563112 CNGA3Q16281 694 aa16.88■□□□□ 0.29
CLK3-210ENST00000563112 ODF2Q5BJF6 829 aa16.88■□□□□ 0.29
CLK3-210ENST00000563112 CDCP2Q5VXM1 449 aa16.88■□□□□ 0.29
CLK3-210ENST00000563112 PNCKQ6P2M8 343 aa16.88■□□□□ 0.29
CLK3-210ENST00000563112 GUSBP11Q6P575 273 aa16.88■□□□□ 0.29
CLK3-210ENST00000563112 USP45Q70EL2 814 aa16.88■□□□□ 0.29
CLK3-210ENST00000563112 CCNYQ8ND76 341 aa16.88■□□□□ 0.29
CLK3-210ENST00000563112 OR56A4Q8NGH8 313 aa16.88■□□□□ 0.29
CLK3-210ENST00000563112 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.88■□□□□ 0.29
CLK3-210ENST00000563112 MAML1Q92585 1016 aa16.88■□□□□ 0.29
CLK3-210ENST00000563112 FATE1Q969F0 183 aa16.88■□□□□ 0.29
CLK3-210ENST00000563112 FUBP1Q96AE4 644 aaKnown RBP16.88■□□□□ 0.29
CLK3-210ENST00000563112 FAF2Q96CS3 445 aa16.88■□□□□ 0.29
CLK3-210ENST00000563112 NUS1Q96E22 293 aa16.88■□□□□ 0.29
CLK3-210ENST00000563112 SCRN2Q96FV2 425 aa16.88■□□□□ 0.29
CLK3-210ENST00000563112 COQ10AQ96MF6 247 aa16.88■□□□□ 0.29
CLK3-210ENST00000563112 MAK16Q9BXY0 300 aaKnown RBP16.88■□□□□ 0.29
CLK3-210ENST00000563112 WDR26Q9H7D7 661 aa16.88■□□□□ 0.29
CLK3-210ENST00000563112 RBM22Q9NW64 420 aaKnown RBP eCLIP16.88■□□□□ 0.29
CLK3-210ENST00000563112 GULP1Q9UBP9 304 aa16.88■□□□□ 0.29
CLK3-210ENST00000563112 LHX6Q9UPM6 363 aa16.88■□□□□ 0.29
CLK3-210ENST00000563112 TTLL3Q9Y4R7 772 aa16.88■□□□□ 0.29
CLK3-210ENST00000563112 RAI2Q9Y5P3 530 aa16.88■□□□□ 0.29
CLK3-210ENST00000563112 ASXL3Q9C0F0 2248 aa16.88■□□□□ 0.29
CLK3-210ENST00000563112 LRRD1A4D1F6 860 aa16.87■□□□□ 0.29
CLK3-210ENST00000563112 TNFRSF10CO14798 259 aa16.87■□□□□ 0.29
CLK3-210ENST00000563112 MAP3K6O95382 1288 aa16.87■□□□□ 0.29
CLK3-210ENST00000563112 CCNB1P14635 433 aa16.87■□□□□ 0.29
CLK3-210ENST00000563112 TRIM23P36406 574 aa16.87■□□□□ 0.29
CLK3-210ENST00000563112 EPHB1P54762 984 aa16.87■□□□□ 0.29
CLK3-210ENST00000563112 SLC35F3Q8IY50 421 aa16.87■□□□□ 0.29
CLK3-210ENST00000563112 PQLC3Q8N755 202 aa16.87■□□□□ 0.29
CLK3-210ENST00000563112 RAPGEF5Q92565 580 aa16.87■□□□□ 0.29
CLK3-210ENST00000563112 RNF157Q96PX1 679 aa16.87■□□□□ 0.29
CLK3-210ENST00000563112 TRIM5Q9C035 493 aa16.87■□□□□ 0.29
CLK3-210ENST00000563112 PHPT1Q9NRX4 125 aaPredicted RBP16.87■□□□□ 0.29
CLK3-210ENST00000563112 MOSPD1Q9UJG1 213 aa16.87■□□□□ 0.29
CLK3-210ENST00000563112 INTUQ9ULD6 942 aa16.87■□□□□ 0.29
CLK3-210ENST00000563112 PADI4Q9UM07 663 aa16.87■□□□□ 0.29
CLK3-210ENST00000563112 GPR34Q9UPC5 381 aa16.87■□□□□ 0.29
CLK3-210ENST00000563112 GPSM3Q9Y4H4 160 aa16.87■□□□□ 0.29
CLK3-210ENST00000563112 DGKBQ9Y6T7 804 aa16.87■□□□□ 0.29
CLK3-210ENST00000563112 WDFY3Q8IZQ1 3526 aa16.86■□□□□ 0.29
CLK3-210ENST00000563112 CSO75390 466 aaKnown RBP16.86■□□□□ 0.29
CLK3-210ENST00000563112 MTA2O94776 668 aa16.86■□□□□ 0.29
CLK3-210ENST00000563112 GM2AP17900 193 aa16.86■□□□□ 0.29
CLK3-210ENST00000563112 GBE1Q04446 702 aa16.86■□□□□ 0.29
CLK3-210ENST00000563112 C19orf48Q6RUI8 117 aa16.86■□□□□ 0.29
CLK3-210ENST00000563112 CCDC13Q8IYE1 715 aa16.86■□□□□ 0.29
CLK3-210ENST00000563112 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.86■□□□□ 0.29
CLK3-210ENST00000563112 ARL10Q8N8L6 244 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms