RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 TEX33O43247 280 aa17.88■□□□□ 0.45
TSPAN3-208ENST00000560514 RECQL5O94762 991 aaPredicted RBP17.88■□□□□ 0.45
TSPAN3-208ENST00000560514 PLEKP08567 350 aaPredicted RBP17.88■□□□□ 0.45
TSPAN3-208ENST00000560514 HOXC4P09017 264 aaPredicted RBP17.88■□□□□ 0.45
TSPAN3-208ENST00000560514 CCNB1P14635 433 aa17.88■□□□□ 0.45
TSPAN3-208ENST00000560514 PON1P27169 355 aa17.88■□□□□ 0.45
TSPAN3-208ENST00000560514 CD1CP29017 333 aa17.88■□□□□ 0.45
TSPAN3-208ENST00000560514 SDC4P31431 198 aa17.88■□□□□ 0.45
TSPAN3-208ENST00000560514 MAN1A1P33908 653 aa17.88■□□□□ 0.45
TSPAN3-208ENST00000560514 MMP12P39900 470 aa17.88■□□□□ 0.45
TSPAN3-208ENST00000560514 STAT1P42224 750 aa17.88■□□□□ 0.45
TSPAN3-208ENST00000560514 MC1RQ01726 317 aa17.88■□□□□ 0.45
TSPAN3-208ENST00000560514 CDC20Q12834 499 aa17.88■□□□□ 0.45
TSPAN3-208ENST00000560514 C2CD6Q53TS8 623 aa17.88■□□□□ 0.45
TSPAN3-208ENST00000560514 TRNP1Q6NT89 227 aa17.88■□□□□ 0.45
TSPAN3-208ENST00000560514 ARCQ7LC44 396 aa17.88■□□□□ 0.45
TSPAN3-208ENST00000560514 ZNF438Q7Z4V0 828 aa17.88■□□□□ 0.45
TSPAN3-208ENST00000560514 NLGN4XQ8N0W4 816 aa17.88■□□□□ 0.45
TSPAN3-208ENST00000560514 NLGN4YQ8NFZ3 816 aaPredicted RBP17.88■□□□□ 0.45
TSPAN3-208ENST00000560514 MIB2Q96AX9 1013 aa17.88■□□□□ 0.45
TSPAN3-208ENST00000560514 TEFMQ96QE5 360 aaKnown RBP17.88■□□□□ 0.45
TSPAN3-208ENST00000560514 CARS2Q9HA77 564 aaKnown RBP17.88■□□□□ 0.45
TSPAN3-208ENST00000560514 METTL5Q9NRN9 209 aaKnown RBP17.88■□□□□ 0.45
TSPAN3-208ENST00000560514 SPATS2LQ9NUQ6 558 aaKnown RBP17.88■□□□□ 0.45
TSPAN3-208ENST00000560514 NBPF19A0A087WUL8 3843 aa17.87■□□□□ 0.45
TSPAN3-208ENST00000560514 TSPAN11A1L157 253 aa17.87■□□□□ 0.45
TSPAN3-208ENST00000560514 PRR19A6NJB7 356 aa17.87■□□□□ 0.45
TSPAN3-208ENST00000560514 FAM72CH0Y354 149 aa17.87■□□□□ 0.45
TSPAN3-208ENST00000560514 MTSS1O43312 755 aa17.87■□□□□ 0.45
TSPAN3-208ENST00000560514 AGFG2O95081 481 aa17.87■□□□□ 0.45
TSPAN3-208ENST00000560514 ECEL1O95672 775 aa17.87■□□□□ 0.45
TSPAN3-208ENST00000560514 ELFN1P0C7U0 828 aa17.87■□□□□ 0.45
TSPAN3-208ENST00000560514 PNMA6AP0CW24 399 aaPredicted RBP17.87■□□□□ 0.45
TSPAN3-208ENST00000560514 BMP6P22004 513 aa17.87■□□□□ 0.45
TSPAN3-208ENST00000560514 MAP4P27816 1152 aaKnown RBP17.87■□□□□ 0.45
TSPAN3-208ENST00000560514 COPB1P53618 953 aaKnown RBP17.87■□□□□ 0.45
TSPAN3-208ENST00000560514 DEFB109BQ30KR1 87 aa17.87■□□□□ 0.45
TSPAN3-208ENST00000560514 FAM72AQ5TYM5 149 aa17.87■□□□□ 0.45
TSPAN3-208ENST00000560514 TAF3Q5VWG9 929 aa17.87■□□□□ 0.45
TSPAN3-208ENST00000560514 FAM72DQ6L9T8 149 aa17.87■□□□□ 0.45
TSPAN3-208ENST00000560514 KDELC2Q7Z4H8 507 aa17.87■□□□□ 0.45
TSPAN3-208ENST00000560514 FAM72BQ86X60 149 aa17.87■□□□□ 0.45
TSPAN3-208ENST00000560514 EMC1Q8N766 993 aa17.87■□□□□ 0.45
TSPAN3-208ENST00000560514 TEX19Q8NA77 164 aa17.87■□□□□ 0.45
TSPAN3-208ENST00000560514 UBA2Q9UBT2 640 aaPredicted RBP17.87■□□□□ 0.45
TSPAN3-208ENST00000560514 CREBBPQ92793 2442 aa17.86■□□□□ 0.45
TSPAN3-208ENST00000560514 EFCAB7A8K855 629 aa17.86■□□□□ 0.45
TSPAN3-208ENST00000560514 B4E171 279 aa17.86■□□□□ 0.45
TSPAN3-208ENST00000560514 BIN1O00499 593 aa17.86■□□□□ 0.45
TSPAN3-208ENST00000560514 DUX1O43812 170 aa17.86■□□□□ 0.45
TSPAN3-208ENST00000560514 LSM8O95777 96 aaKnown RBP17.86■□□□□ 0.45
TSPAN3-208ENST00000560514 PRKCGP05129 697 aa17.86■□□□□ 0.45
TSPAN3-208ENST00000560514 FGF1P05230 155 aa17.86■□□□□ 0.45
TSPAN3-208ENST00000560514 CYP11B1P15538 503 aa17.86■□□□□ 0.45
TSPAN3-208ENST00000560514 MPSTP25325 297 aa17.86■□□□□ 0.45
TSPAN3-208ENST00000560514 TSPAN7P41732 249 aa17.86■□□□□ 0.45
TSPAN3-208ENST00000560514 YBEYP58557 167 aaPredicted RBP17.86■□□□□ 0.45
TSPAN3-208ENST00000560514 RAPGEF1Q13905 1077 aa17.86■□□□□ 0.45
TSPAN3-208ENST00000560514 NR1D2Q14995 579 aa17.86■□□□□ 0.45
TSPAN3-208ENST00000560514 C15orf59Q2T9L4 293 aaPredicted RBP17.86■□□□□ 0.45
TSPAN3-208ENST00000560514 NKAIN2Q5VXU1 208 aa17.86■□□□□ 0.45
TSPAN3-208ENST00000560514 ANKS6Q68DC2 871 aa17.86■□□□□ 0.45
TSPAN3-208ENST00000560514 FAM71AQ8IYT1 594 aa17.86■□□□□ 0.45
TSPAN3-208ENST00000560514 RTL3Q8N8U3 475 aaKnown RBP17.86■□□□□ 0.45
TSPAN3-208ENST00000560514 AHCYL2Q96HN2 611 aaKnown RBP17.86■□□□□ 0.45
TSPAN3-208ENST00000560514 TUBGCP5Q96RT8 1024 aa17.86■□□□□ 0.45
TSPAN3-208ENST00000560514 OCIAD1Q9NX40 245 aa17.86■□□□□ 0.45
TSPAN3-208ENST00000560514 TAAR2Q9P1P5 351 aa17.86■□□□□ 0.45
TSPAN3-208ENST00000560514 PLEKHB1Q9UF11 243 aaPredicted RBP17.86■□□□□ 0.45
TSPAN3-208ENST00000560514 VPS4BO75351 444 aa17.85■□□□□ 0.45
TSPAN3-208ENST00000560514 THRAP10827 490 aa17.85■□□□□ 0.45
TSPAN3-208ENST00000560514 TCN2P20062 427 aa17.85■□□□□ 0.45
TSPAN3-208ENST00000560514 EPHB2P29323 1055 aa17.85■□□□□ 0.45
TSPAN3-208ENST00000560514 SERPINA4P29622 427 aa17.85■□□□□ 0.45
TSPAN3-208ENST00000560514 TRIM23P36406 574 aa17.85■□□□□ 0.45
TSPAN3-208ENST00000560514 CD97P48960 835 aa17.85■□□□□ 0.45
TSPAN3-208ENST00000560514 ACOX1Q15067 660 aa17.85■□□□□ 0.45
TSPAN3-208ENST00000560514 PARP15Q460N3 678 aa17.85■□□□□ 0.45
TSPAN3-208ENST00000560514 HIST2H2BCQ6DN03 193 aa17.85■□□□□ 0.45
TSPAN3-208ENST00000560514 C16orf46Q6P387 395 aa17.85■□□□□ 0.45
TSPAN3-208ENST00000560514 SLC30A9Q6PML9 568 aa17.85■□□□□ 0.45
TSPAN3-208ENST00000560514 PHLDB2Q86SQ0 1253 aa17.85■□□□□ 0.45
TSPAN3-208ENST00000560514 C17orf82Q86X59 251 aaPredicted RBP17.85■□□□□ 0.45
TSPAN3-208ENST00000560514 CAMK1DQ8IU85 385 aa17.85■□□□□ 0.45
TSPAN3-208ENST00000560514 RXFP2Q8WXD0 754 aa17.85■□□□□ 0.45
TSPAN3-208ENST00000560514 CPA5Q8WXQ8 436 aa17.85■□□□□ 0.45
TSPAN3-208ENST00000560514 LGR4Q9BXB1 951 aa17.85■□□□□ 0.45
TSPAN3-208ENST00000560514 ATP13A3Q9H7F0 1226 aa17.85■□□□□ 0.45
TSPAN3-208ENST00000560514 PHPT1Q9NRX4 125 aaPredicted RBP17.85■□□□□ 0.45
TSPAN3-208ENST00000560514 KCNK4Q9NYG8 393 aa17.85■□□□□ 0.45
TSPAN3-208ENST00000560514 LHX3Q9UBR4 397 aa17.85■□□□□ 0.45
TSPAN3-208ENST00000560514 AJAP1Q9UKB5 411 aaPredicted RBP17.85■□□□□ 0.45
TSPAN3-208ENST00000560514 PILRAQ9UKJ1 303 aa17.85■□□□□ 0.45
TSPAN3-208ENST00000560514 VPS4AQ9UN37 437 aa17.85■□□□□ 0.45
TSPAN3-208ENST00000560514 RASA4BC9J798 803 aa17.84■□□□□ 0.45
TSPAN3-208ENST00000560514 RASA4O43374 803 aa17.84■□□□□ 0.45
TSPAN3-208ENST00000560514 MYCLP1P12525 358 aaPredicted RBP17.84■□□□□ 0.45
TSPAN3-208ENST00000560514 MTIF2P46199 727 aaKnown RBP17.84■□□□□ 0.45
TSPAN3-208ENST00000560514 GNPDA1P46926 289 aa17.84■□□□□ 0.45
TSPAN3-208ENST00000560514 POLR2LP62875 67 aaKnown RBP17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms