RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 PTAR1Q7Z6K3 402 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-228ENST00000557302 ABI3BPQ7Z7G0 1075 aa13.63□□□□□ -0.23
SHMT2-228ENST00000557302 OR2I1PQ8NGU4 316 aa13.63□□□□□ -0.23
SHMT2-228ENST00000557302 MAIP1Q8WWC4 291 aa13.63□□□□□ -0.23
SHMT2-228ENST00000557302 ATG4AQ8WYN0 398 aa13.63□□□□□ -0.23
SHMT2-228ENST00000557302 RMDN1Q96DB5 314 aa13.63□□□□□ -0.23
SHMT2-228ENST00000557302 SPATA13Q96N96 652 aa13.63□□□□□ -0.23
SHMT2-228ENST00000557302 FCRL5Q96RD9 977 aa13.63□□□□□ -0.23
SHMT2-228ENST00000557302 GBA3Q9H227 469 aa13.63□□□□□ -0.23
SHMT2-228ENST00000557302 GAREM1Q9H706 876 aa13.63□□□□□ -0.23
SHMT2-228ENST00000557302 USP29Q9HBJ7 922 aa13.63□□□□□ -0.23
SHMT2-228ENST00000557302 GDF3Q9NR23 364 aa13.63□□□□□ -0.23
SHMT2-228ENST00000557302 UBP1Q9NZI7 540 aa13.63□□□□□ -0.23
SHMT2-228ENST00000557302 FAM153AQ9UHL3 310 aa13.63□□□□□ -0.23
SHMT2-228ENST00000557302 DNPEPQ9ULA0 475 aa13.63□□□□□ -0.23
SHMT2-228ENST00000557302 CACNA1AO00555 2505 aa13.62□□□□□ -0.23
SHMT2-228ENST00000557302 POM121BA6NF01 834 aa13.62□□□□□ -0.23
SHMT2-228ENST00000557302 CAPN8A6NHC0 703 aa13.62□□□□□ -0.23
SHMT2-228ENST00000557302 ANKRD66B4E2M5 251 aa13.62□□□□□ -0.23
SHMT2-228ENST00000557302 F5H423 210 aaPredicted RBP13.62□□□□□ -0.23
SHMT2-228ENST00000557302 SLC30A4O14863 429 aa13.62□□□□□ -0.23
SHMT2-228ENST00000557302 OPHN1O60890 802 aa13.62□□□□□ -0.23
SHMT2-228ENST00000557302 RECQL5O94762 991 aaPredicted RBP13.62□□□□□ -0.23
SHMT2-228ENST00000557302 FGGP02679 453 aa13.62□□□□□ -0.23
SHMT2-228ENST00000557302 LHCGRP22888 699 aa13.62□□□□□ -0.23
SHMT2-228ENST00000557302 CXCR5P32302 372 aa13.62□□□□□ -0.23
SHMT2-228ENST00000557302 TNNT3P45378 269 aaPredicted RBP13.62□□□□□ -0.23
SHMT2-228ENST00000557302 GALNT3Q14435 633 aa13.62□□□□□ -0.23
SHMT2-228ENST00000557302 LRRC14Q15048 493 aa13.62□□□□□ -0.23
SHMT2-228ENST00000557302 AGERQ15109 404 aa13.62□□□□□ -0.23
SHMT2-228ENST00000557302 IRF4Q15306 451 aa13.62□□□□□ -0.23
SHMT2-228ENST00000557302 QPCTQ16769 361 aa13.62□□□□□ -0.23
SHMT2-228ENST00000557302 UAP1L1Q3KQV9 507 aa13.62□□□□□ -0.23
SHMT2-228ENST00000557302 ANKRD20A2Q5SQ80 823 aa13.62□□□□□ -0.23
SHMT2-228ENST00000557302 ANKRD20A1Q5TYW2 823 aa13.62□□□□□ -0.23
SHMT2-228ENST00000557302 ANKRD20A3Q5VUR7 823 aa13.62□□□□□ -0.23
SHMT2-228ENST00000557302 CCDC70Q6NSX1 233 aa13.62□□□□□ -0.23
SHMT2-228ENST00000557302 KDELC2Q7Z4H8 507 aa13.62□□□□□ -0.23
SHMT2-228ENST00000557302 TSPAN33Q86UF1 283 aa13.62□□□□□ -0.23
SHMT2-228ENST00000557302 FAM71DQ8N9W8 422 aa13.62□□□□□ -0.23
SHMT2-228ENST00000557302 TP53I13Q8NBR0 393 aaPredicted RBP13.62□□□□□ -0.23
SHMT2-228ENST00000557302 OR13H1Q8NG92 308 aa13.62□□□□□ -0.23
SHMT2-228ENST00000557302 CCDC110Q8TBZ0 833 aa13.62□□□□□ -0.23
SHMT2-228ENST00000557302 CENPTQ96BT3 561 aa13.62□□□□□ -0.23
SHMT2-228ENST00000557302 OXNAD1Q96HP4 312 aaPredicted RBP13.62□□□□□ -0.23
SHMT2-228ENST00000557302 BMFQ96LC9 184 aa13.62□□□□□ -0.23
SHMT2-228ENST00000557302 SMIM14Q96QK8 99 aa13.62□□□□□ -0.23
SHMT2-228ENST00000557302 TRIB3Q96RU7 358 aa13.62□□□□□ -0.23
SHMT2-228ENST00000557302 MLPHQ9BV36 600 aaPredicted RBP13.62□□□□□ -0.23
SHMT2-228ENST00000557302 DNAAF2Q9NVR5 837 aaKnown RBP13.62□□□□□ -0.23
SHMT2-228ENST00000557302 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.62□□□□□ -0.23
SHMT2-228ENST00000557302 DOCK9Q9BZ29 2069 aa13.61□□□□□ -0.23
SHMT2-228ENST00000557302 C5orf60A6NFR6 353 aa13.61□□□□□ -0.23
SHMT2-228ENST00000557302 PSMD11O00231 422 aa13.61□□□□□ -0.23
SHMT2-228ENST00000557302 LIASO43766 372 aa13.61□□□□□ -0.23
SHMT2-228ENST00000557302 DFNA5O60443 496 aa13.61□□□□□ -0.23
SHMT2-228ENST00000557302 ANXA9O76027 345 aa13.61□□□□□ -0.23
SHMT2-228ENST00000557302 NDST3O95803 873 aa13.61□□□□□ -0.23
SHMT2-228ENST00000557302 ATP1A1P05023 1023 aaKnown RBP13.61□□□□□ -0.23
SHMT2-228ENST00000557302 ZNF30P17039 623 aa13.61□□□□□ -0.23
SHMT2-228ENST00000557302 IGFALSP35858 605 aa13.61□□□□□ -0.23
SHMT2-228ENST00000557302 RABIFP47224 123 aa13.61□□□□□ -0.23
SHMT2-228ENST00000557302 GEMP55040 296 aa13.61□□□□□ -0.23
SHMT2-228ENST00000557302 WNT3AP56704 352 aa13.61□□□□□ -0.23
SHMT2-228ENST00000557302 FOXK2Q01167 660 aa13.61□□□□□ -0.23
SHMT2-228ENST00000557302 MPP3Q13368 585 aa13.61□□□□□ -0.23
SHMT2-228ENST00000557302 PRPSAP1Q14558 356 aa13.61□□□□□ -0.23
SHMT2-228ENST00000557302 PTPRRQ15256 657 aa13.61□□□□□ -0.23
SHMT2-228ENST00000557302 LONRF2Q1L5Z9 754 aa13.61□□□□□ -0.23
SHMT2-228ENST00000557302 ZNF423Q2M1K9 1284 aa13.61□□□□□ -0.23
SHMT2-228ENST00000557302 WSCD2Q2TBF2 565 aa13.61□□□□□ -0.23
SHMT2-228ENST00000557302 LRRC66Q68CR7 880 aa13.61□□□□□ -0.23
SHMT2-228ENST00000557302 DENND2CQ68D51 928 aa13.61□□□□□ -0.23
SHMT2-228ENST00000557302 CRTC1Q6UUV9 634 aa13.61□□□□□ -0.23
SHMT2-228ENST00000557302 KDELC1Q6UW63 502 aa13.61□□□□□ -0.23
SHMT2-228ENST00000557302 Q6ZSR6 202 aa13.61□□□□□ -0.23
SHMT2-228ENST00000557302 ARHGEF18Q6ZSZ5 1173 aa13.61□□□□□ -0.23
SHMT2-228ENST00000557302 DCP2Q8IU60 420 aaKnown RBP13.61□□□□□ -0.23
SHMT2-228ENST00000557302 OXR1Q8N573 874 aa13.61□□□□□ -0.23
SHMT2-228ENST00000557302 C1orf54Q8WWF1 131 aa13.61□□□□□ -0.23
SHMT2-228ENST00000557302 PBKQ96KB5 322 aa13.61□□□□□ -0.23
SHMT2-228ENST00000557302 COQ10AQ96MF6 247 aa13.61□□□□□ -0.23
SHMT2-228ENST00000557302 PPP1R2P1Q96PQ5 205 aa13.61□□□□□ -0.23
SHMT2-228ENST00000557302 LYSMD1Q96S90 227 aa13.61□□□□□ -0.23
SHMT2-228ENST00000557302 TMEM121Q9BTD3 319 aa13.61□□□□□ -0.23
SHMT2-228ENST00000557302 ERVMER34-1Q9H9K5 563 aa13.61□□□□□ -0.23
SHMT2-228ENST00000557302 IL21RQ9HBE5 538 aa13.61□□□□□ -0.23
SHMT2-228ENST00000557302 MBNL1Q9NR56 388 aaKnown RBP13.61□□□□□ -0.23
SHMT2-228ENST00000557302 KCTD5Q9NXV2 234 aa13.61□□□□□ -0.23
SHMT2-228ENST00000557302 ZNF148Q9UQR1 794 aa13.61□□□□□ -0.23
SHMT2-228ENST00000557302 FNDC3AQ9Y2H6 1198 aaKnown RBP13.61□□□□□ -0.23
SHMT2-228ENST00000557302 ZKSCAN5Q9Y2L8 839 aa13.61□□□□□ -0.23
SHMT2-228ENST00000557302 C1orf232A0A0U1RR37 186 aa13.6□□□□□ -0.23
SHMT2-228ENST00000557302 GOLGA8CPA6NN73 597 aa13.6□□□□□ -0.23
SHMT2-228ENST00000557302 TOR1BO14657 336 aa13.6□□□□□ -0.23
SHMT2-228ENST00000557302 GCATO75600 419 aa13.6□□□□□ -0.23
SHMT2-228ENST00000557302 ZNF883P0CG24 379 aa13.6□□□□□ -0.23
SHMT2-228ENST00000557302 GM2AP17900 193 aa13.6□□□□□ -0.23
SHMT2-228ENST00000557302 PSMB4P28070 264 aa13.6□□□□□ -0.23
SHMT2-228ENST00000557302 STIP1P31948 543 aaKnown RBP13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms