RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	CD1C	P29017	333 aa		12.7	□□□□□ -0.38
SHMT2-223	ENST00000556689	RFC1	P35251	1148 aa	Predicted RBP	12.7	□□□□□ -0.38
SHMT2-223	ENST00000556689	GPR3	P46089	330 aa		12.7	□□□□□ -0.38
SHMT2-223	ENST00000556689	CCR10	P46092	362 aa		12.7	□□□□□ -0.38
SHMT2-223	ENST00000556689	CSNK1D	P48730	415 aa		12.7	□□□□□ -0.38
SHMT2-223	ENST00000556689	MAZ	P56270	477 aa	Known RBP	12.7	□□□□□ -0.38
SHMT2-223	ENST00000556689	POLE2	P56282	527 aa		12.7	□□□□□ -0.38
SHMT2-223	ENST00000556689	POLR2L	P62875	67 aa	Known RBP	12.7	□□□□□ -0.38
SHMT2-223	ENST00000556689	CDR2	Q01850	454 aa		12.7	□□□□□ -0.38
SHMT2-223	ENST00000556689	KCNAB2	Q13303	367 aa		12.7	□□□□□ -0.38
SHMT2-223	ENST00000556689	CAMK4	Q16566	473 aa		12.7	□□□□□ -0.38
SHMT2-223	ENST00000556689	PNCK	Q6P2M8	343 aa		12.7	□□□□□ -0.38
SHMT2-223	ENST00000556689	SCYL2	Q6P3W7	929 aa		12.7	□□□□□ -0.38
SHMT2-223	ENST00000556689	ZNF438	Q7Z4V0	828 aa		12.7	□□□□□ -0.38
SHMT2-223	ENST00000556689	SRL	Q86TD4	932 aa		12.7	□□□□□ -0.38
SHMT2-223	ENST00000556689	C17orf82	Q86X59	251 aa	Predicted RBP	12.7	□□□□□ -0.38
SHMT2-223	ENST00000556689	RCBTB1	Q8NDN9	531 aa		12.7	□□□□□ -0.38
SHMT2-223	ENST00000556689	SLC30A5	Q8TAD4	765 aa		12.7	□□□□□ -0.38
SHMT2-223	ENST00000556689	ZDHHC1	Q8WTX9	485 aa		12.7	□□□□□ -0.38
SHMT2-223	ENST00000556689	SLC20A1	Q8WUM9	679 aa		12.7	□□□□□ -0.38
SHMT2-223	ENST00000556689	C11orf70	Q9BRQ4	267 aa		12.7	□□□□□ -0.38
SHMT2-223	ENST00000556689	LGR4	Q9BXB1	951 aa		12.7	□□□□□ -0.38
SHMT2-223	ENST00000556689	ATP13A3	Q9H7F0	1226 aa		12.7	□□□□□ -0.38
SHMT2-223	ENST00000556689	DONSON	Q9NYP3	566 aa		12.7	□□□□□ -0.38
SHMT2-223	ENST00000556689	TUBD1	Q9UJT1	453 aa		12.7	□□□□□ -0.38
SHMT2-223	ENST00000556689	PCDHGA3	Q9Y5H0	932 aa		12.7	□□□□□ -0.38
SHMT2-223	ENST00000556689	UBR5	O95071	2799 aa	Predicted RBP	12.7	□□□□□ -0.38
SHMT2-223	ENST00000556689	UNC13C	Q8NB66	2214 aa		12.7	□□□□□ -0.38
SHMT2-223	ENST00000556689	IGHV5-10-1	A0A0J9YXX1	117 aa		12.69	□□□□□ -0.38
SHMT2-223	ENST00000556689	PRSS38	A1L453	326 aa		12.69	□□□□□ -0.38
SHMT2-223	ENST00000556689		J3KR12	359 aa		12.69	□□□□□ -0.38
SHMT2-223	ENST00000556689	TEX33	O43247	280 aa		12.69	□□□□□ -0.38
SHMT2-223	ENST00000556689	GFPT2	O94808	682 aa		12.69	□□□□□ -0.38
SHMT2-223	ENST00000556689	ELFN1	P0C7U0	828 aa		12.69	□□□□□ -0.38
SHMT2-223	ENST00000556689	GPD1	P21695	349 aa		12.69	□□□□□ -0.38
SHMT2-223	ENST00000556689	SERPINA4	P29622	427 aa		12.69	□□□□□ -0.38
SHMT2-223	ENST00000556689	ARSD	P51689	593 aa		12.69	□□□□□ -0.38
SHMT2-223	ENST00000556689	LIMK2	P53671	638 aa		12.69	□□□□□ -0.38
SHMT2-223	ENST00000556689	RALGDS	Q12967	914 aa		12.69	□□□□□ -0.38
SHMT2-223	ENST00000556689	BIRC2	Q13490	618 aa		12.69	□□□□□ -0.38
SHMT2-223	ENST00000556689	TRA2A	Q13595	282 aa	Known RBP eCLIP	12.69	□□□□□ -0.38
SHMT2-223	ENST00000556689	SKIDA1	Q1XH10	827 aa		12.69	□□□□□ -0.38
SHMT2-223	ENST00000556689	AFMID	Q63HM1	303 aa		12.69	□□□□□ -0.38
SHMT2-223	ENST00000556689	WDR59	Q6PJI9	974 aa		12.69	□□□□□ -0.38
SHMT2-223	ENST00000556689	CLEC17A	Q6ZS10	378 aa		12.69	□□□□□ -0.38
SHMT2-223	ENST00000556689	PAF1	Q8N7H5	531 aa		12.69	□□□□□ -0.38
SHMT2-223	ENST00000556689	CCDC112	Q8NEF3	446 aa		12.69	□□□□□ -0.38
SHMT2-223	ENST00000556689	CATSPER2	Q96P56	530 aa		12.69	□□□□□ -0.38
SHMT2-223	ENST00000556689	NUDT22	Q9BRQ3	303 aa		12.69	□□□□□ -0.38
SHMT2-223	ENST00000556689	SELENOO	Q9BVL4	669 aa		12.69	□□□□□ -0.38
SHMT2-223	ENST00000556689	GSDMC	Q9BYG8	508 aa		12.69	□□□□□ -0.38
SHMT2-223	ENST00000556689	EPN3	Q9H201	632 aa		12.69	□□□□□ -0.38
SHMT2-223	ENST00000556689	WDR26	Q9H7D7	661 aa		12.69	□□□□□ -0.38
SHMT2-223	ENST00000556689	CARS2	Q9HA77	564 aa	Known RBP	12.69	□□□□□ -0.38
SHMT2-223	ENST00000556689	NOCT	Q9UK39	431 aa	Known RBP	12.69	□□□□□ -0.38
SHMT2-223	ENST00000556689		A8MX80	341 aa		12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	FGF10	O15520	208 aa	Predicted RBP	12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	PRAMEF11	O60813	436 aa		12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	PALM	O75781	387 aa		12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	ECEL1	O95672	775 aa		12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	GP1BB	P13224	206 aa		12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	LIF	P15018	202 aa		12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	CHRNB2	P17787	502 aa		12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	CSTF2	P33240	577 aa	Known RBP eCLIP	12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	UGT1A3	P35503	534 aa		12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	CASR	P41180	1078 aa		12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	NDST2	P52849	883 aa		12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	FOXK1	P85037	733 aa		12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	FMO1	Q01740	532 aa		12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	BCL2L1	Q07817	233 aa		12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	ILF3	Q12906	894 aa	Known RBP eCLIP	12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	NR1D2	Q14995	579 aa		12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	ACOX1	Q15067	660 aa		12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	IGFBP7	Q16270	282 aa		12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	HSP90AA4P	Q58FG1	418 aa		12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	TRIM72	Q6ZMU5	477 aa		12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	NRROS	Q86YC3	692 aa		12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	CACNA2D3	Q8IZS8	1091 aa		12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	TSEN2	Q8NCE0	465 aa	Known RBP	12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	AGBL5	Q8NDL9	886 aa		12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	OR4D9	Q8NGE8	314 aa		12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	ART4	Q93070	314 aa		12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	ECHDC3	Q96DC8	303 aa		12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	CCDC74B	Q96LY2	380 aa		12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	DDA1	Q9BW61	102 aa		12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	ASPSCR1	Q9BZE9	553 aa		12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	LRRC19	Q9H756	370 aa		12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	SUDS3	Q9H7L9	328 aa	Predicted RBP	12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	PDF	Q9HBH1	243 aa		12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	TRNAU1AP	Q9NX07	287 aa	Known RBP	12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	SLC39A1	Q9NY26	324 aa		12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	ADAM22	Q9P0K1	906 aa		12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	TAAR2	Q9P1P5	351 aa		12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	ANAPC2	Q9UJX6	822 aa		12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	FZD10	Q9ULW2	581 aa		12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	B3GALT1	Q9Y5Z6	326 aa		12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	CHD5	Q8TDI0	1954 aa		12.68	□□□□□ -0.38
SHMT2-223	ENST00000556689	SCN8A	Q9UQD0	1980 aa		12.67	□□□□□ -0.38
SHMT2-223	ENST00000556689	SIGLEC16	A6NMB1	481 aa		12.67	□□□□□ -0.38
SHMT2-223	ENST00000556689	ZNF891	A8MT65	544 aa	Predicted RBP	12.67	□□□□□ -0.38

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