RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 IL27RAQ6UWB1 636 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 LRRC69Q6ZNQ3 347 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 TPGS1Q6ZTW0 290 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 CCDC91Q7Z6B0 441 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 PRUNE1Q86TP1 453 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 ZC3H18Q86VM9 953 aaKnown RBP11.25□□□□□ -0.61
SHMT2-216ENST00000554975 SLC26A11Q86WA9 606 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 TMPRSS12Q86WS5 348 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 ANKMY2Q8IV38 441 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 PQLC3Q8N755 202 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 CCDC63Q8NA47 563 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 CADM4Q8NFZ8 388 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 PCDH19Q8TAB3 1148 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 RAB3IL1Q8TBN0 382 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 TFB1MQ8WVM0 346 aaKnown RBP11.25□□□□□ -0.61
SHMT2-216ENST00000554975 CDKL2Q92772 493 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 FAM149B1Q96BN6 582 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 NXPE2Q96DL1 559 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 PIWIL1Q96J94 861 aaKnown RBP11.25□□□□□ -0.61
SHMT2-216ENST00000554975 PITPNM3Q9BZ71 974 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 CNGB3Q9NQW8 809 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 IL37Q9NZH6 218 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 SH3BP1Q9Y3L3 701 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 HEY1Q9Y5J3 304 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 STON1Q9Y6Q2 735 aa11.25□□□□□ -0.61
SHMT2-216ENST00000554975 UNC79Q9P2D8 2635 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 TEX51A0A1B0GUA7 166 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 A0A1W2PQH9 124 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 HHLA1C9JL84 531 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 ANKRD65E5RJM6 399 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 H0Y8X5 98 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 AP3B1O00203 1094 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 CAPN9O14815 690 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 TLR5O60602 858 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 EDF1O60869 148 aaKnown RBP11.24□□□□□ -0.61
SHMT2-216ENST00000554975 F9P00740 461 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 TYRP14679 529 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 PRKCHP24723 683 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 SSTR1P30872 391 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 L1CAMP32004 1257 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 SERPINB6P35237 376 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 ELK3P41970 407 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 IL12RB1P42701 662 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 MAGEA3P43357 314 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 RASSF2P50749 326 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 ADIGQ0VDE8 80 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 DNAJC3Q13217 504 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 TAF5Q15542 800 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 KCTD19Q17RG1 926 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-216ENST00000554975 METTL3Q86U44 580 aaKnown RBP11.24□□□□□ -0.61
SHMT2-216ENST00000554975 PIGZQ86VD9 579 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 LRRC6Q86X45 466 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 CYP4X1Q8N118 509 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 SNIP1Q8TAD8 396 aaKnown RBP11.24□□□□□ -0.61
SHMT2-216ENST00000554975 GSDMBQ8TAX9 411 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 DENND1AQ8TEH3 1009 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 DCAKDQ8WVC6 231 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 IRGQQ8WZA9 623 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 SPATA13Q96N96 652 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 OLFM3Q96PB7 478 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 PPP1R2P1Q96PQ5 205 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 CSPG4P5Q96PW8 444 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 SLC2A13Q96QE2 648 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 RAB3IPQ96QF0 476 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-216ENST00000554975 BBS2Q9BXC9 721 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 VPS11Q9H270 941 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 CLMPQ9H6B4 373 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 USP29Q9HBJ7 922 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 POPDC2Q9HBU9 364 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 PLK2Q9NYY3 685 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 ZC3H7BQ9UGR2 993 aaKnown RBP11.24□□□□□ -0.61
SHMT2-216ENST00000554975 SCML2Q9UQR0 700 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 AK5Q9Y6K8 562 aa11.24□□□□□ -0.61
SHMT2-216ENST00000554975 TCRBV9S1A1TA0A576 114 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 FAM92AA1XBS5 289 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 ERI2A8K979 691 aaKnown RBP11.23□□□□□ -0.61
SHMT2-216ENST00000554975 GFRA2O00451 464 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 TBX18O95935 607 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 ATP5BP06576 529 aaKnown RBP11.23□□□□□ -0.61
SHMT2-216ENST00000554975 APRTP07741 180 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 SNRPAP09012 282 aaKnown RBP11.23□□□□□ -0.61
SHMT2-216ENST00000554975 ZDHHC11BP0C7U3 371 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 LCP1P13796 627 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 MX2P20592 715 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 RBL1P28749 1068 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 SLC8A1P32418 973 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 HTR7P34969 479 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 ATP5C1P36542 298 aaKnown RBP11.23□□□□□ -0.61
SHMT2-216ENST00000554975 CCNFP41002 786 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 GRK6P43250 576 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 TUBP50607 506 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 COPAP53621 1224 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 CXADRP78310 365 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 TLE3Q04726 772 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 TARDBPQ13148 414 aaKnown RBP eCLIP11.23□□□□□ -0.61
SHMT2-216ENST00000554975 SUZ12Q15022 739 aaKnown RBP11.23□□□□□ -0.61
SHMT2-216ENST00000554975 SNCBQ16143 134 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 PREPLQ4J6C6 727 aaPredicted RBP11.23□□□□□ -0.61
SHMT2-216ENST00000554975 C10orf120Q5SQS8 335 aa11.23□□□□□ -0.61
SHMT2-216ENST00000554975 FNBP1LQ5T0N5 605 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms