RNA–Protein interactions for RNA: ENST00000554636.1

VTI1B-203, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 3

Gene VTI1B, Length 565 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-203ENST00000554636 SNX30Q5VWJ9 437 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 AFMIDQ63HM1 303 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 KRT39Q6A163 491 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 ANKRD40Q6AI12 368 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 TTI2Q6NXR4 508 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 TSSK4Q6SA08 328 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 CLEC20AQ6ZU45 233 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 ACOT1Q86TX2 421 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 SPATS2Q86XZ4 545 aaKnown RBP4.36□□□□□ -1.71
VTI1B-203ENST00000554636 ULK2Q8IYT8 1036 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 NUP93Q8N1F7 819 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 C12orf29Q8N999 325 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 ZBTB44Q8NCP5 570 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 CPEB3Q8NE35 698 aaKnown RBP4.36□□□□□ -1.71
VTI1B-203ENST00000554636 ZFP28Q8NHY6 868 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 SCAMP5Q8TAC9 235 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 SLC2A14Q8TDB8 520 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 OSCP1Q8WVF1 389 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 OVCA2Q8WZ82 227 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 FATE1Q969F0 183 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 SMARCE1Q969G3 411 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 FBXO32Q969P5 355 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 WBP2Q969T9 261 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 FAXDC2Q96IV6 333 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 TNIP3Q96KP6 325 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 DCLRE1CQ96SD1 692 aaKnown RBP4.36□□□□□ -1.71
VTI1B-203ENST00000554636 CYP2S1Q96SQ9 504 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 KCNK16Q96T55 309 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 NEU1Q99519 415 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 TSG101Q99816 390 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 MED10Q9BTT4 135 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 EBF3Q9H4W6 596 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 ECT2Q9H8V3 914 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 CYP3A43Q9HB55 503 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 CSNK1G1Q9HCP0 422 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 GKN1Q9NS71 199 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 FAM49BQ9NUQ9 324 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 C2orf42Q9NWW7 574 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 COMMD8Q9NX08 183 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 ZSCAN32Q9NX65 697 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 DUS2Q9NX74 493 aaKnown RBP4.36□□□□□ -1.71
VTI1B-203ENST00000554636 EHD2Q9NZN4 543 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 AJAP1Q9UKB5 411 aaPredicted RBP4.36□□□□□ -1.71
VTI1B-203ENST00000554636 CLCA2Q9UQC9 943 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 CHST2Q9Y4C5 530 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 CPQQ9Y646 472 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 EML5Q05BV3 1969 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 DCHS1Q96JQ0 3298 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 SDK1Q7Z5N4 2213 aa4.36□□□□□ -1.71
VTI1B-203ENST00000554636 PSMA7O14818 248 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 PMM2O15305 246 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 COCHO43405 550 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 EGFP01133 1207 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 LMNAP02545 664 aaKnown RBP4.35□□□□□ -1.71
VTI1B-203ENST00000554636 FAM200BP0CF97 657 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 MBL2P11226 248 aaPredicted RBP4.35□□□□□ -1.71
VTI1B-203ENST00000554636 CD58P19256 250 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 MGAT1P26572 445 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 YWHAQP27348 245 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 OPRD1P41143 372 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 PPP3CCP48454 512 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 TUBP50607 506 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 CCR3P51677 355 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 RAD23BP54727 409 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 CLRN1P58418 232 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 CSTF1Q05048 431 aaKnown RBP4.35□□□□□ -1.71
VTI1B-203ENST00000554636 CUL2Q13617 745 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 SMN1Q16637 294 aaKnown RBP4.35□□□□□ -1.71
VTI1B-203ENST00000554636 DGKKQ5KSL6 1271 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 ARHGAP17Q68EM7 881 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 ISM2Q6H9L7 571 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 KLHL10Q6JEL2 608 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 DRICH1Q6PGQ1 229 aaPredicted RBP4.35□□□□□ -1.71
VTI1B-203ENST00000554636 FOXR2Q6PJQ5 311 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 FAM180AQ6UWF9 173 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 MED25Q71SY5 747 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 TTC30AQ86WT1 665 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 PLXDC1Q8IUK5 500 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 SPEM1Q8N4L4 309 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 CPA6Q8N4T0 437 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 PPM1NQ8N819 430 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 SUMF1Q8NBK3 374 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 SLC4A11Q8NBS3 891 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 BEND2Q8NDZ0 799 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 FBXL13Q8NEE6 735 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 OR7D4Q8NG98 312 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 GPR150Q8NGU9 434 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 CCHCR1Q8TD31 782 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 NELFBQ8WX92 580 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 ATP2A3Q93084 1043 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 SLC35C1Q96A29 364 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 DHTKD1Q96HY7 919 aaPredicted RBP4.35□□□□□ -1.71
VTI1B-203ENST00000554636 SLITRK1Q96PX8 696 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 HNRNPABQ99729 332 aaKnown RBP4.35□□□□□ -1.71
VTI1B-203ENST00000554636 ZSWIM1Q9BR11 485 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 GTPBP4Q9BZE4 634 aaKnown RBP4.35□□□□□ -1.71
VTI1B-203ENST00000554636 IMPG2Q9BZV3 1241 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 BCO1Q9HAY6 547 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 NMUR1Q9HB89 426 aa4.35□□□□□ -1.71
VTI1B-203ENST00000554636 FBRSL1Q9HCM7 1045 aaKnown RBP4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms