RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 TRIM65Q6PJ69 517 aa12.96□□□□□ -0.33
VPS29-211ENST00000553128 ASB18Q6ZVZ8 466 aa12.96□□□□□ -0.33
VPS29-211ENST00000553128 SLC47A2Q86VL8 602 aa12.96□□□□□ -0.33
VPS29-211ENST00000553128 NAGSQ8N159 534 aa12.96□□□□□ -0.33
VPS29-211ENST00000553128 CCDC112Q8NEF3 446 aa12.96□□□□□ -0.33
VPS29-211ENST00000553128 KIAA1524Q8TCG1 905 aa12.96□□□□□ -0.33
VPS29-211ENST00000553128 KIAA1143Q96AT1 154 aaPredicted RBP12.96□□□□□ -0.33
VPS29-211ENST00000553128 NOL6Q9H6R4 1146 aaKnown RBP12.96□□□□□ -0.33
VPS29-211ENST00000553128 TMEM248Q9NWD8 314 aa12.96□□□□□ -0.33
VPS29-211ENST00000553128 TAAR2Q9P1P5 351 aa12.96□□□□□ -0.33
VPS29-211ENST00000553128 LHX3Q9UBR4 397 aa12.96□□□□□ -0.33
VPS29-211ENST00000553128 OR12D3Q9UGF7 316 aa12.96□□□□□ -0.33
VPS29-211ENST00000553128 TSPAN11A1L157 253 aa12.95□□□□□ -0.34
VPS29-211ENST00000553128 A8MU76 341 aa12.95□□□□□ -0.34
VPS29-211ENST00000553128 TNFRSF10CO14798 259 aa12.95□□□□□ -0.34
VPS29-211ENST00000553128 RAMP2O60895 175 aa12.95□□□□□ -0.34
VPS29-211ENST00000553128 CLDN1O95832 211 aa12.95□□□□□ -0.34
VPS29-211ENST00000553128 RHOQP17081 205 aa12.95□□□□□ -0.34
VPS29-211ENST00000553128 TCN2P20062 427 aa12.95□□□□□ -0.34
VPS29-211ENST00000553128 MAP4P27816 1152 aaKnown RBP12.95□□□□□ -0.34
VPS29-211ENST00000553128 TRIM23P36406 574 aa12.95□□□□□ -0.34
VPS29-211ENST00000553128 ETFBP38117 255 aa12.95□□□□□ -0.34
VPS29-211ENST00000553128 MAPKAPK2P49137 400 aa12.95□□□□□ -0.34
VPS29-211ENST00000553128 RAD51Q06609 339 aa12.95□□□□□ -0.34
VPS29-211ENST00000553128 RALGDSQ12967 914 aa12.95□□□□□ -0.34
VPS29-211ENST00000553128 SEPT6Q14141 434 aa12.95□□□□□ -0.34
VPS29-211ENST00000553128 CYTH1Q15438 398 aa12.95□□□□□ -0.34
VPS29-211ENST00000553128 CLPPQ16740 277 aaPredicted RBP12.95□□□□□ -0.34
VPS29-211ENST00000553128 ACBD5Q5T8D3 534 aaPredicted RBP12.95□□□□□ -0.34
VPS29-211ENST00000553128 KLHL10Q6JEL2 608 aa12.95□□□□□ -0.34
VPS29-211ENST00000553128 TCTN3Q6NUS6 607 aa12.95□□□□□ -0.34
VPS29-211ENST00000553128 SLC30A9Q6PML9 568 aa12.95□□□□□ -0.34
VPS29-211ENST00000553128 PHLDB2Q86SQ0 1253 aa12.95□□□□□ -0.34
VPS29-211ENST00000553128 TMEM135Q86UB9 458 aa12.95□□□□□ -0.34
VPS29-211ENST00000553128 ZNF761Q86XN6 746 aaPredicted RBP12.95□□□□□ -0.34
VPS29-211ENST00000553128 XYLT1Q86Y38 959 aa12.95□□□□□ -0.34
VPS29-211ENST00000553128 ZDHHC17Q8IUH5 632 aa12.95□□□□□ -0.34
VPS29-211ENST00000553128 GALNT11Q8NCW6 608 aa12.95□□□□□ -0.34
VPS29-211ENST00000553128 SHC3Q92529 594 aa12.95□□□□□ -0.34
VPS29-211ENST00000553128 GSDMAQ96QA5 445 aa12.95□□□□□ -0.34
VPS29-211ENST00000553128 MAGEH1Q9H213 219 aa12.95□□□□□ -0.34
VPS29-211ENST00000553128 SUV39H2Q9H5I1 410 aa12.95□□□□□ -0.34
VPS29-211ENST00000553128 CARS2Q9HA77 564 aaKnown RBP12.95□□□□□ -0.34
VPS29-211ENST00000553128 PRDM8Q9NQV8 689 aa12.95□□□□□ -0.34
VPS29-211ENST00000553128 HPCAL4Q9UM19 191 aa12.95□□□□□ -0.34
VPS29-211ENST00000553128 ZDHHC9Q9Y397 364 aa12.95□□□□□ -0.34
VPS29-211ENST00000553128 OTOGQ6ZRI0 2925 aa12.94□□□□□ -0.34
VPS29-211ENST00000553128 AKAP9Q99996 3911 aa12.94□□□□□ -0.34
VPS29-211ENST00000553128 TTLL8A6PVC2 850 aa12.94□□□□□ -0.34
VPS29-211ENST00000553128 GOLGA8SH3BPF8 625 aa12.94□□□□□ -0.34
VPS29-211ENST00000553128 PSMA7O14818 248 aa12.94□□□□□ -0.34
VPS29-211ENST00000553128 TEX33O43247 280 aa12.94□□□□□ -0.34
VPS29-211ENST00000553128 STK17BO94768 372 aa12.94□□□□□ -0.34
VPS29-211ENST00000553128 LRIG2O94898 1065 aa12.94□□□□□ -0.34
VPS29-211ENST00000553128 CLCN1P35523 988 aa12.94□□□□□ -0.34
VPS29-211ENST00000553128 KRT9P35527 623 aa12.94□□□□□ -0.34
VPS29-211ENST00000553128 GPR3P46089 330 aa12.94□□□□□ -0.34
VPS29-211ENST00000553128 RAB15P59190 212 aa12.94□□□□□ -0.34
VPS29-211ENST00000553128 KRT85P78386 507 aa12.94□□□□□ -0.34
VPS29-211ENST00000553128 ATP11AP98196 1134 aa12.94□□□□□ -0.34
VPS29-211ENST00000553128 ABHD18Q0P651 414 aa12.94□□□□□ -0.34
VPS29-211ENST00000553128 SQSTM1Q13501 440 aa12.94□□□□□ -0.34
VPS29-211ENST00000553128 SNAP47Q5SQN1 464 aa12.94□□□□□ -0.34
VPS29-211ENST00000553128 ENOSF1Q7L5Y1 443 aa12.94□□□□□ -0.34
VPS29-211ENST00000553128 KDELC2Q7Z4H8 507 aa12.94□□□□□ -0.34
VPS29-211ENST00000553128 HEATR4Q86WZ0 1026 aa12.94□□□□□ -0.34
VPS29-211ENST00000553128 ZNF354CQ86Y25 554 aa12.94□□□□□ -0.34
VPS29-211ENST00000553128 CAMK1DQ8IU85 385 aa12.94□□□□□ -0.34
VPS29-211ENST00000553128 CCDC13Q8IYE1 715 aa12.94□□□□□ -0.34
VPS29-211ENST00000553128 EMC1Q8N766 993 aa12.94□□□□□ -0.34
VPS29-211ENST00000553128 CPT1CQ8TCG5 803 aa12.94□□□□□ -0.34
VPS29-211ENST00000553128 DHTKD1Q96HY7 919 aaPredicted RBP12.94□□□□□ -0.34
VPS29-211ENST00000553128 NCAPGQ9BPX3 1015 aa12.94□□□□□ -0.34
VPS29-211ENST00000553128 GDPD2Q9HCC8 539 aa12.94□□□□□ -0.34
VPS29-211ENST00000553128 TMEM59LQ9UK28 342 aa12.94□□□□□ -0.34
VPS29-211ENST00000553128 ATP8A1Q9Y2Q0 1164 aa12.94□□□□□ -0.34
VPS29-211ENST00000553128 PLEKHM1Q9Y4G2 1056 aa12.94□□□□□ -0.34
VPS29-211ENST00000553128 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.94□□□□□ -0.34
VPS29-211ENST00000553128 DOPEY1Q5JWR5 2465 aa12.93□□□□□ -0.34
VPS29-211ENST00000553128 A8MX80 341 aa12.93□□□□□ -0.34
VPS29-211ENST00000553128 DLGAP3O95886 979 aa12.93□□□□□ -0.34
VPS29-211ENST00000553128 CEACAM5P06731 702 aa12.93□□□□□ -0.34
VPS29-211ENST00000553128 HOXC4P09017 264 aaPredicted RBP12.93□□□□□ -0.34
VPS29-211ENST00000553128 ADRA1BP35368 520 aa12.93□□□□□ -0.34
VPS29-211ENST00000553128 STAT1P42224 750 aa12.93□□□□□ -0.34
VPS29-211ENST00000553128 STAT5AP42229 794 aa12.93□□□□□ -0.34
VPS29-211ENST00000553128 GNPDA1P46926 289 aa12.93□□□□□ -0.34
VPS29-211ENST00000553128 GABRB2P47870 512 aa12.93□□□□□ -0.34
VPS29-211ENST00000553128 SUOXP51687 545 aa12.93□□□□□ -0.34
VPS29-211ENST00000553128 MC2RQ01718 297 aa12.93□□□□□ -0.34
VPS29-211ENST00000553128 C15orf59Q2T9L4 293 aaPredicted RBP12.93□□□□□ -0.34
VPS29-211ENST00000553128 ERAP2Q6P179 960 aa12.93□□□□□ -0.34
VPS29-211ENST00000553128 PNCKQ6P2M8 343 aa12.93□□□□□ -0.34
VPS29-211ENST00000553128 TMEM71Q6P5X7 295 aa12.93□□□□□ -0.34
VPS29-211ENST00000553128 LIPIQ6XZB0 460 aa12.93□□□□□ -0.34
VPS29-211ENST00000553128 FMR1NBQ8N0W7 255 aaPredicted RBP12.93□□□□□ -0.34
VPS29-211ENST00000553128 NELFBQ8WX92 580 aa12.93□□□□□ -0.34
VPS29-211ENST00000553128 WDR26Q9H7D7 661 aa12.93□□□□□ -0.34
VPS29-211ENST00000553128 PDP2Q9P2J9 529 aa12.93□□□□□ -0.34
VPS29-211ENST00000553128 TLK1Q9UKI8 766 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms