RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 SNRPB2P08579 225 aaKnown RBP7.52□□□□□ -1.21
LIMA1-213ENST00000552720 FAM163BP0C2L3 166 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 ODC1P11926 461 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 ATP6V1B2P21281 511 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 HOXC13P31276 330 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 SOX11P35716 441 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 LEPRP48357 1165 aaKnown RBP7.52□□□□□ -1.21
LIMA1-213ENST00000552720 CPT1AP50416 773 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 SERPINH1P50454 418 aaKnown RBP7.52□□□□□ -1.21
LIMA1-213ENST00000552720 ZNF135P52742 658 aaPredicted RBP7.52□□□□□ -1.21
LIMA1-213ENST00000552720 SH3BP2P78314 561 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 RHDQ02161 417 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 AGAP9Q5VTM2 703 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 CXCL17Q6UXB2 119 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 LARP4Q71RC2 724 aaKnown RBP eCLIP7.52□□□□□ -1.21
LIMA1-213ENST00000552720 ANKRD23Q86SG2 305 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 ISCA2Q86U28 154 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 CIR1Q86X95 450 aaPredicted RBP7.52□□□□□ -1.21
LIMA1-213ENST00000552720 ZNF354CQ86Y25 554 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 CILP2Q8IUL8 1156 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 SCN4BQ8IWT1 228 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 CATSPER1Q8NEC5 780 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 GPR152Q8TDT2 470 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 DIS3LQ8TF46 1054 aaKnown RBP7.52□□□□□ -1.21
LIMA1-213ENST00000552720 CANT1Q8WVQ1 401 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 PSMG2Q969U7 264 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 NSUN5Q96P11 429 aaKnown RBP7.52□□□□□ -1.21
LIMA1-213ENST00000552720 ACBD6Q9BR61 282 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 MRPS26Q9BYN8 205 aaKnown RBP7.52□□□□□ -1.21
LIMA1-213ENST00000552720 SMOC2Q9H3U7 446 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 EPB41L1Q9H4G0 881 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 ZNF696Q9H7X3 374 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 LIN28AQ9H9Z2 209 aaKnown RBP7.52□□□□□ -1.21
LIMA1-213ENST00000552720 UTP6Q9NYH9 597 aaKnown RBP7.52□□□□□ -1.21
LIMA1-213ENST00000552720 CD300AQ9UGN4 299 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 BCAP29Q9UHQ4 241 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 CNOT6Q9ULM6 557 aaKnown RBP7.52□□□□□ -1.21
LIMA1-213ENST00000552720 VWA7Q9Y334 891 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 VWA8A3KMH1 1905 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 FAM149AA5PLN7 773 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 TNFRSF10BO14763 440 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 FGF10O15520 208 aaPredicted RBP7.52□□□□□ -1.21
LIMA1-213ENST00000552720 NRP2O60462 931 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 B4GALT3O60512 393 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 TBX18O95935 607 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 ASLP04424 464 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 PSMC3P17980 439 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 HOXC8P31273 242 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 CD52P31358 61 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 GRIA3P42263 894 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 APLP1P51693 650 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 CDH15P55291 814 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 MAP2K5Q13163 448 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 STX5Q13190 355 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 CAPRIN1Q14444 709 aaKnown RBP7.52□□□□□ -1.21
LIMA1-213ENST00000552720 GRB7Q14451 532 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 SEMA3AQ14563 771 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 UNC50Q53HI1 259 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 SIRPB2Q5JXA9 342 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 ZNF678Q5SXM1 525 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 MORN1Q5T089 497 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 AFMIDQ63HM1 303 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 OVOS1Q6IE37 1185 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 ZNF549Q6P9A3 640 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 TMEM126BQ8IUX1 230 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 PGBD5Q8N414 524 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 IMP4Q96G21 291 aaKnown RBP7.52□□□□□ -1.21
LIMA1-213ENST00000552720 HIC2Q96JB3 615 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 TBATAQ96M53 351 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 AP5M1Q9H0R1 490 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 SLC25A51Q9H1U9 297 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 MRM3Q9HC36 420 aaKnown RBP7.52□□□□□ -1.21
LIMA1-213ENST00000552720 SPAG4Q9NPE6 437 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 ABCC13Q9NSE7 274 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 POLR3BQ9NW08 1133 aaPredicted RBP7.52□□□□□ -1.21
LIMA1-213ENST00000552720 HSFX1Q9UBD0 423 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 EGFL7Q9UHF1 273 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 TRPV2Q9Y5S1 764 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 ACTL7AQ9Y615 435 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 TCRBV3S1A0A5B6 114 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 ARHGEF37A1IGU5 675 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 UBXN8O00124 270 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 PDLIM1O00151 329 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 NR5A2O00482 541 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 NME4O00746 187 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 SOCS2O14508 198 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 TPST1O60507 370 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 S1PR4O95977 384 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 IMPDH1P20839 514 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 DNAJB1P25685 340 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 SLC5A2P31639 672 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 CYP2C18P33260 490 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 RGS2P41220 211 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 POLD2P49005 469 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 CLCN5P51795 746 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 KPNA2P52292 529 aaKnown RBP7.51□□□□□ -1.21
LIMA1-213ENST00000552720 ECT2LQ008S8 904 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 TIAL1Q01085 375 aaKnown RBP eCLIP7.51□□□□□ -1.21
LIMA1-213ENST00000552720 ACAP2Q15057 778 aa7.51□□□□□ -1.21
LIMA1-213ENST00000552720 OR4D1Q15615 310 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms