RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	GLE1	Q53GS7	698 aa	Known RBP	4.26	□□□□□ -1.73
USP44-208	ENST00000552440	PLA1A	Q53H76	456 aa		4.26	□□□□□ -1.73
USP44-208	ENST00000552440	FAM47A	Q5JRC9	791 aa		4.26	□□□□□ -1.73
USP44-208	ENST00000552440	TCTE1	Q5JU00	501 aa		4.26	□□□□□ -1.73
USP44-208	ENST00000552440	ZNF569	Q5MCW4	686 aa		4.26	□□□□□ -1.73
USP44-208	ENST00000552440	SPDYC	Q5MJ68	293 aa		4.26	□□□□□ -1.73
USP44-208	ENST00000552440	NEK5	Q6P3R8	708 aa		4.26	□□□□□ -1.73
USP44-208	ENST00000552440	SERPINA13P	Q6UXR4	307 aa		4.26	□□□□□ -1.73
USP44-208	ENST00000552440	C15orf39	Q6ZRI6	1047 aa		4.26	□□□□□ -1.73
USP44-208	ENST00000552440	SEM1	Q6ZVN7	128 aa		4.26	□□□□□ -1.73
USP44-208	ENST00000552440	RRM2B	Q7LG56	351 aa		4.26	□□□□□ -1.73
USP44-208	ENST00000552440	IQCH	Q86VS3	1027 aa		4.26	□□□□□ -1.73
USP44-208	ENST00000552440	GAS2L3	Q86XJ1	694 aa		4.26	□□□□□ -1.73
USP44-208	ENST00000552440	P3H2	Q8IVL5	708 aa		4.26	□□□□□ -1.73
USP44-208	ENST00000552440	MMP21	Q8N119	569 aa		4.26	□□□□□ -1.73
USP44-208	ENST00000552440	ZCCHC7	Q8N3Z6	543 aa	Known RBP	4.26	□□□□□ -1.73
USP44-208	ENST00000552440	CADM4	Q8NFZ8	388 aa		4.26	□□□□□ -1.73
USP44-208	ENST00000552440	OR7G3	Q8NG95	312 aa		4.26	□□□□□ -1.73
USP44-208	ENST00000552440	GRAPL	Q8TC17	118 aa	Predicted RBP	4.26	□□□□□ -1.73
USP44-208	ENST00000552440	ABHD5	Q8WTS1	349 aa		4.26	□□□□□ -1.73
USP44-208	ENST00000552440	IP6K1	Q92551	441 aa		4.26	□□□□□ -1.73
USP44-208	ENST00000552440	PTER	Q96BW5	349 aa		4.26	□□□□□ -1.73
USP44-208	ENST00000552440	FBXL20	Q96IG2	436 aa		4.26	□□□□□ -1.73
USP44-208	ENST00000552440	CAMK1G	Q96NX5	476 aa		4.26	□□□□□ -1.73
USP44-208	ENST00000552440	PARK7	Q99497	189 aa	Known RBP	4.26	□□□□□ -1.73
USP44-208	ENST00000552440	PKP2	Q99959	881 aa		4.26	□□□□□ -1.73
USP44-208	ENST00000552440	BCL7B	Q9BQE9	202 aa		4.26	□□□□□ -1.73
USP44-208	ENST00000552440	CARD6	Q9BX69	1037 aa		4.26	□□□□□ -1.73
USP44-208	ENST00000552440	ZNF350	Q9GZX5	532 aa		4.26	□□□□□ -1.73
USP44-208	ENST00000552440	C12orf65	Q9H3J6	166 aa	Known RBP	4.26	□□□□□ -1.73
USP44-208	ENST00000552440	CCDC134	Q9H6E4	229 aa		4.26	□□□□□ -1.73
USP44-208	ENST00000552440	GORASP2	Q9H8Y8	452 aa		4.26	□□□□□ -1.73
USP44-208	ENST00000552440	RPRD1B	Q9NQG5	326 aa	Known RBP	4.26	□□□□□ -1.73
USP44-208	ENST00000552440	HPS4	Q9NQG7	708 aa		4.26	□□□□□ -1.73
USP44-208	ENST00000552440	ARHGEF38	Q9NXL2	777 aa		4.26	□□□□□ -1.73
USP44-208	ENST00000552440	FASTKD2	Q9NYY8	710 aa	Known RBP eCLIP	4.26	□□□□□ -1.73
USP44-208	ENST00000552440	DNMT3B	Q9UBC3	853 aa	Known RBP	4.26	□□□□□ -1.73
USP44-208	ENST00000552440	CD207	Q9UJ71	328 aa		4.26	□□□□□ -1.73
USP44-208	ENST00000552440	STX8	Q9UNK0	236 aa		4.26	□□□□□ -1.73
USP44-208	ENST00000552440	STRAP	Q9Y3F4	350 aa	Known RBP	4.26	□□□□□ -1.73
USP44-208	ENST00000552440	RBM8A	Q9Y5S9	174 aa	Known RBP	4.26	□□□□□ -1.73
USP44-208	ENST00000552440	ZMYM3	Q14202	1370 aa		4.26	□□□□□ -1.73
USP44-208	ENST00000552440	RNF123	Q5XPI4	1314 aa		4.26	□□□□□ -1.73
USP44-208	ENST00000552440	LOC102723996	A0A087X1L8	192 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	TCRBV7S2A1N4T	A0A589	114 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	NCF1B	A6NI72	391 aa	Predicted RBP	4.25	□□□□□ -1.73
USP44-208	ENST00000552440	NCF1C	A8MVU1	366 aa	Predicted RBP	4.25	□□□□□ -1.73
USP44-208	ENST00000552440		E9PBE3	544 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	QSOX1	O00391	747 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	SMAD6	O43541	496 aa	Known RBP	4.25	□□□□□ -1.73
USP44-208	ENST00000552440	NUDT21	O43809	227 aa	Known RBP	4.25	□□□□□ -1.73
USP44-208	ENST00000552440	CDC14B	O60729	498 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	TOX4	O94842	621 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	PEX11B	O96011	259 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	AK1	P00568	194 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	NPPA	P01160	153 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	GBA	P04062	536 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	CCDC172	P0C7W6	258 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	RAP2A	P10114	183 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	ACRV1	P26436	265 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	CCND2	P30279	289 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	SOAT1	P35610	550 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	USP8	P40818	1118 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	PNLIPRP2	P54317	469 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	SLFN5	Q08AF3	891 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	CSTF3	Q12996	717 aa	Known RBP	4.25	□□□□□ -1.73
USP44-208	ENST00000552440	PLD1	Q13393	1074 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	DDX39B	Q13838	428 aa	Known RBP	4.25	□□□□□ -1.73
USP44-208	ENST00000552440	GALNT3	Q14435	633 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	EFTUD2	Q15029	972 aa	Known RBP eCLIP	4.25	□□□□□ -1.73
USP44-208	ENST00000552440	TAZ	Q16635	292 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	CYP2A13	Q16696	494 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	FUT11	Q495W5	492 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	AARD	Q4LEZ3	155 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	TDRD12	Q587J7	1177 aa	Known RBP	4.25	□□□□□ -1.73
USP44-208	ENST00000552440	FBXO48	Q5FWF7	155 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	C1orf185	Q5T7R7	199 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	METTL11B	Q5VVY1	283 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	JADE1	Q6IE81	842 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	MSANTD2	Q6P1R3	559 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	CLEC2A	Q6UVW9	174 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	MOXD1	Q6UVY6	613 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	B3GNT6	Q6ZMB0	384 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	TAS2R42	Q7RTR8	314 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	CAMKMT	Q7Z624	323 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	PDSS2	Q86YH6	399 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	C1orf210	Q8IVY1	113 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	DDIAS	Q8IXT1	998 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	CLYBL	Q8N0X4	340 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	BBS5	Q8N3I7	341 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	PLD5	Q8N7P1	536 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	OR13C2	Q8NGS9	318 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	ZNF671	Q8TAW3	534 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	RNFT2	Q96EX2	444 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	C5orf30	Q96GV9	206 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	SEMA3C	Q99985	751 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	NDC1	Q9BTX1	674 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	SPATA5L1	Q9BVQ7	753 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	GPR35	Q9HC97	309 aa		4.25	□□□□□ -1.73
USP44-208	ENST00000552440	TMEM184C	Q9NVA4	438 aa		4.25	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms