RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 A0A1W2PRG0 241 aa4.25□□□□□ -1.73
VPS29-205ENST00000548539 FAM90A8PA6NJQ4 464 aa4.25□□□□□ -1.73
VPS29-205ENST00000548539 TAF4O00268 1085 aa4.25□□□□□ -1.73
VPS29-205ENST00000548539 SOCS2O14508 198 aa4.25□□□□□ -1.73
VPS29-205ENST00000548539 ATG13O75143 517 aa4.25□□□□□ -1.73
VPS29-205ENST00000548539 CNOT3O75175 753 aaKnown RBP4.25□□□□□ -1.73
VPS29-205ENST00000548539 BEST1O76090 585 aa4.25□□□□□ -1.73
VPS29-205ENST00000548539 NDUFB8O95169 186 aa4.25□□□□□ -1.73
VPS29-205ENST00000548539 RB1P06400 928 aa4.25□□□□□ -1.73
VPS29-205ENST00000548539 FAM90A13PP0C7W8 464 aa4.25□□□□□ -1.73
VPS29-205ENST00000548539 FAM90A24PP0C7X0 464 aa4.25□□□□□ -1.73
VPS29-205ENST00000548539 ENO3P13929 434 aaPredicted RBP4.25□□□□□ -1.73
VPS29-205ENST00000548539 CHRNB2P17787 502 aa4.25□□□□□ -1.73
VPS29-205ENST00000548539 PSMB10P40306 273 aa4.25□□□□□ -1.73
VPS29-205ENST00000548539 GALCP54803 685 aa4.25□□□□□ -1.73
VPS29-205ENST00000548539 PRAMEP78395 509 aa4.25□□□□□ -1.73
VPS29-205ENST00000548539 IRX6P78412 446 aaPredicted RBP4.25□□□□□ -1.73
VPS29-205ENST00000548539 FAM27E3Q08E93 113 aa4.25□□□□□ -1.73
VPS29-205ENST00000548539 OLIG2Q13516 323 aa4.25□□□□□ -1.73
VPS29-205ENST00000548539 ZSCAN23Q3MJ62 389 aa4.25□□□□□ -1.73
VPS29-205ENST00000548539 SGO1Q5FBB7 561 aa4.25□□□□□ -1.73
VPS29-205ENST00000548539 KIAA0930Q6ICG6 404 aaPredicted RBP4.25□□□□□ -1.73
VPS29-205ENST00000548539 SARM1Q6SZW1 724 aa4.25□□□□□ -1.73
VPS29-205ENST00000548539 SLC16A12Q6ZSM3 486 aa4.25□□□□□ -1.73
VPS29-205ENST00000548539 ADGRF2Q8IZF7 708 aa4.25□□□□□ -1.73
VPS29-205ENST00000548539 ZBTB8BQ8NAP8 495 aaPredicted RBP4.25□□□□□ -1.73
VPS29-205ENST00000548539 ENGASEQ8NFI3 743 aa4.25□□□□□ -1.73
VPS29-205ENST00000548539 HUS1BQ8NHY5 278 aa4.25□□□□□ -1.73
VPS29-205ENST00000548539 ERGIC1Q969X5 290 aa4.25□□□□□ -1.73
VPS29-205ENST00000548539 FBXL8Q96CD0 374 aa4.25□□□□□ -1.73
VPS29-205ENST00000548539 MARK4Q96L34 752 aa4.25□□□□□ -1.73
VPS29-205ENST00000548539 SRSF8Q9BRL6 282 aaKnown RBP4.25□□□□□ -1.73
VPS29-205ENST00000548539 C1QTNF5Q9BXJ0 243 aa4.25□□□□□ -1.73
VPS29-205ENST00000548539 KLHL31Q9H511 634 aa4.25□□□□□ -1.73
VPS29-205ENST00000548539 SLC28A3Q9HAS3 691 aa4.25□□□□□ -1.73
VPS29-205ENST00000548539 ANKRD10Q9NXR5 420 aa4.25□□□□□ -1.73
VPS29-205ENST00000548539 CISD1Q9NZ45 108 aaKnown RBP4.25□□□□□ -1.73
VPS29-205ENST00000548539 HEY2Q9UBP5 337 aa4.25□□□□□ -1.73
VPS29-205ENST00000548539 PCDHA12Q9UN75 941 aa4.25□□□□□ -1.73
VPS29-205ENST00000548539 TMEM5Q9Y2B1 443 aa4.25□□□□□ -1.73
VPS29-205ENST00000548539 ZMYM2Q9UBW7 1377 aa4.25□□□□□ -1.73
VPS29-205ENST00000548539 CACNA1IQ9P0X4 2223 aa4.25□□□□□ -1.73
VPS29-205ENST00000548539 SYNDIG1LA6NDD5 238 aa4.24□□□□□ -1.73
VPS29-205ENST00000548539 A8MZ25 164 aa4.24□□□□□ -1.73
VPS29-205ENST00000548539 H3BQ06 376 aaPredicted RBP4.24□□□□□ -1.73
VPS29-205ENST00000548539 TCERG1O14776 1098 aaKnown RBP4.24□□□□□ -1.73
VPS29-205ENST00000548539 MDM4O15151 490 aa4.24□□□□□ -1.73
VPS29-205ENST00000548539 P4HA2O15460 535 aa4.24□□□□□ -1.73
VPS29-205ENST00000548539 ZC3H11AO75152 810 aaKnown RBP eCLIP4.24□□□□□ -1.73
VPS29-205ENST00000548539 SLC25A12O75746 678 aa4.24□□□□□ -1.73
VPS29-205ENST00000548539 HOXB5P09067 269 aa4.24□□□□□ -1.73
VPS29-205ENST00000548539 MYZAPP0CAP1 466 aa4.24□□□□□ -1.73
VPS29-205ENST00000548539 GABRB1P18505 474 aa4.24□□□□□ -1.73
VPS29-205ENST00000548539 AGAP20933 346 aa4.24□□□□□ -1.73
VPS29-205ENST00000548539 PIK3CAP42336 1068 aa4.24□□□□□ -1.73
VPS29-205ENST00000548539 P2RX3P56373 397 aa4.24□□□□□ -1.73
VPS29-205ENST00000548539 NAE1Q13564 534 aa4.24□□□□□ -1.73
VPS29-205ENST00000548539 ODF3L2Q3SX64 289 aa4.24□□□□□ -1.73
VPS29-205ENST00000548539 C10orf25Q5T742 122 aa4.24□□□□□ -1.73
VPS29-205ENST00000548539 NCAPH2Q6IBW4 605 aa4.24□□□□□ -1.73
VPS29-205ENST00000548539 GLDNQ6ZMI3 551 aaPredicted RBP4.24□□□□□ -1.73
VPS29-205ENST00000548539 CTU1Q7Z7A3 348 aaKnown RBP4.24□□□□□ -1.73
VPS29-205ENST00000548539 MB21D2Q8IYB1 491 aaPredicted RBP4.24□□□□□ -1.73
VPS29-205ENST00000548539 TEX11Q8IYF3 940 aa4.24□□□□□ -1.73
VPS29-205ENST00000548539 RBFAQ8N0V3 343 aa4.24□□□□□ -1.73
VPS29-205ENST00000548539 LSMEM1Q8N8F7 131 aa4.24□□□□□ -1.73
VPS29-205ENST00000548539 SLC35F5Q8WV83 523 aa4.24□□□□□ -1.73
VPS29-205ENST00000548539 ARHGEF26Q96DR7 871 aa4.24□□□□□ -1.73
VPS29-205ENST00000548539 ELMOD3Q96FG2 381 aa4.24□□□□□ -1.73
VPS29-205ENST00000548539 ZNF570Q96NI8 536 aa4.24□□□□□ -1.73
VPS29-205ENST00000548539 GFM1Q96RP9 751 aaKnown RBP4.24□□□□□ -1.73
VPS29-205ENST00000548539 MSTO1Q9BUK6 570 aa4.24□□□□□ -1.73
VPS29-205ENST00000548539 PLSCR4Q9NRQ2 329 aa4.24□□□□□ -1.73
VPS29-205ENST00000548539 CYSLTR2Q9NS75 346 aa4.24□□□□□ -1.73
VPS29-205ENST00000548539 FBXL17Q9UF56 701 aa4.24□□□□□ -1.73
VPS29-205ENST00000548539 MTMR6Q9Y217 621 aa4.24□□□□□ -1.73
VPS29-205ENST00000548539 TTLL3Q9Y4R7 772 aa4.24□□□□□ -1.73
VPS29-205ENST00000548539 SNX8Q9Y5X2 465 aa4.24□□□□□ -1.73
VPS29-205ENST00000548539 CEPT1Q9Y6K0 416 aa4.24□□□□□ -1.73
VPS29-205ENST00000548539 SESN1Q9Y6P5 492 aa4.24□□□□□ -1.73
VPS29-205ENST00000548539 UTYO14607 1347 aa4.23□□□□□ -1.73
VPS29-205ENST00000548539 A8MV72 311 aaPredicted RBP4.23□□□□□ -1.73
VPS29-205ENST00000548539 KDM4EB2RXH2 506 aaPredicted RBP4.23□□□□□ -1.73
VPS29-205ENST00000548539 ERVV-2B6SEH9 535 aa4.23□□□□□ -1.73
VPS29-205ENST00000548539 CHL1O00533 1208 aa4.23□□□□□ -1.73
VPS29-205ENST00000548539 NDUFS3O75489 264 aa4.23□□□□□ -1.73
VPS29-205ENST00000548539 PGM3O95394 542 aa4.23□□□□□ -1.73
VPS29-205ENST00000548539 ZNF182P17025 639 aaPredicted RBP4.23□□□□□ -1.73
VPS29-205ENST00000548539 PIGAP37287 484 aa4.23□□□□□ -1.73
VPS29-205ENST00000548539 THPOP40225 353 aa4.23□□□□□ -1.73
VPS29-205ENST00000548539 EIF2DP41214 584 aaKnown RBP4.23□□□□□ -1.73
VPS29-205ENST00000548539 IFI35P80217 286 aaPredicted RBP4.23□□□□□ -1.73
VPS29-205ENST00000548539 LRMPQ12912 555 aa4.23□□□□□ -1.73
VPS29-205ENST00000548539 EPS8Q12929 822 aa4.23□□□□□ -1.73
VPS29-205ENST00000548539 STK4Q13043 487 aa4.23□□□□□ -1.73
VPS29-205ENST00000548539 BECN1Q14457 450 aa4.23□□□□□ -1.73
VPS29-205ENST00000548539 RBMS2Q15434 407 aaKnown RBP4.23□□□□□ -1.73
VPS29-205ENST00000548539 C2orf68Q2NKX9 166 aa4.23□□□□□ -1.73
VPS29-205ENST00000548539 ASTE1Q2TB18 679 aaPredicted RBP4.23□□□□□ -1.73
VPS29-205ENST00000548539 MMEL1Q495T6 779 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms